| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,949,941 | C→G | 9.5% | G135R (GGC→CGC) | fliM ← | flagellar biosynthesis switching/energizing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,949,941 | 0 | C | G | 9.5% | 241.7 / 14.2 | 84 | G135R (GGC→CGC) | fliM | flagellar biosynthesis switching/energizing protein |
| Reads supporting (aligned to +/- strand): ref base C (38/37); new base G (4/4); total (43/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.03e-01 | |||||||||||
CTCGGAGTTCATGTACTCGAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCACGTATTCGCCGAACTTCAT > NC_002947/4949798‑4950085 | cTCGGAGTTCATGTACTCGAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATcgc > 3:100065/1‑149 (MQ=255)cTCGGAGTTCATGTACTCGAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATcgc > 2:280025/1‑149 (MQ=255)cTCGGAGTTCATGTACTCGAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACAACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATATTGGCGTGGCGGCCaaagc > 5:285046/1‑145 (MQ=255) ggAGTTCATGTACTCGAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATcgccgc < 7:126810/149‑1 (MQ=255) ttCATGTACTCGAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCGATGGCCGCCacg < 5:25998/149‑3 (MQ=255) tGTACTCGAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCCTAGCCGCCAAAGaaa > 3:409244/1‑149 (MQ=255) tGTACTCGAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGaaa < 3:385159/149‑1 (MQ=255) tGTACTCGAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGaaa < 3:391509/149‑1 (MQ=255) tGTACTCGAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGaaa > 7:114198/1‑149 (MQ=255) tGTACTCGAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATAGACCCCaaaaaa > 4:858/1‑148 (MQ=255) gTACTCGAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATAGCCGCCAAAGAAAt > 5:389329/1‑149 (MQ=255) cTCGAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTg < 5:146809/148‑1 (MQ=255) gAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATcgccgc < 5:58710/134‑1 (MQ=255) gAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTc < 1:280025/147‑1 (MQ=255) aCCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGGCCTTCGATATTGGCGTGGCGGCCATCGCCGCCAAAGAAAATGTCCACCAGCtt > 5:434693/1‑149 (MQ=255) cGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGa < 5:16176/149‑1 (MQ=255) aTGATCGCCTGCCATGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAacac < 5:313162/149‑1 (MQ=255) aTGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCGATGGCCGCCacg > 6:210538/1‑123 (MQ=255) aTGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCGATGGCCGCCacg < 5:210538/125‑3 (MQ=255) aTGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAacac > 5:393861/1‑149 (MQ=255) gATCGCCTGCCAGGATTCCTTGAGGTCGACGAAACACTGGTCCAGCACCTTGCGCACCACACGCAGTTCTGTCGGG‑GTGAACTCACGCCATTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACAcc < 6:216361/148‑1 (MQ=255) aTCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCa < 8:58130/148‑1 (MQ=255) aTCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACAATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCAATTCGATCTTGGCGTGGCGGCAATCGCCAACAAAGAAATTGTCCACCAGCTTGAACACCa > 5:216361/1‑148 (MQ=255) cGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGc < 6:391794/136‑1 (MQ=255) cGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGc > 5:391794/1‑136 (MQ=255) ccTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTg < 4:100065/149‑1 (MQ=255) ccTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTACACCAGCTTGAACACCAGCTTg > 2:285414/1‑149 (MQ=255) gCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTTACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGCAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAg > 5:397948/1‑149 (MQ=255) gCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATAGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCCGCTTGGCGTCGAg > 3:245621/1‑149 (MQ=255) ttCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGa > 7:230623/1‑149 (MQ=255) ccTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGa < 5:394645/147‑1 (MQ=255) ccTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGAt < 5:184348/148‑1 (MQ=255) gacgaAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACAACAGCTTGGCGTCGAGGATGAACAGCGAAg > 5:180598/1‑149 (MQ=255) acgaAACACTGGTCCAGCACCACGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGt < 5:387160/149‑1 (MQ=255) gaAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCTGCCATCGCCGCCAAAAAAAATGTCAACCAACTTGAACAACAGCTTGGCGAAGAGGATGAAAAACGAAGTga > 3:253000/1‑148 (MQ=255) aaCACTGGTCCATCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCcg < 2:430643/149‑1 (MQ=255) aaCACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCCTCGCCGCCAAAGAAATTGTGCCCCACCTTGACCCCCACCGGTGCGGCGCGGATGAACCGCGAAGTGccc > 4:273509/1‑148 (MQ=255) acTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGTTGAACAGCGaa > 5:378320/1‑140 (MQ=255) acTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGaa < 6:378320/140‑1 (MQ=255) cTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGGCAAACCCCGCAAACCAATTGTACACCACCGTTAAAACCCCCAGGGGGGCGACGCTGAACAGCGAAATGCCgcgcc > 6:261974/1‑148 (MQ=255) tGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGGGGCCCTCGCCGCCAAAGAAAATGTGCCCCAGCGTGGGAACCAGCGTGGGGGGGAGGATGAACACCGAAGTGCCccgccg > 3:229085/1‑147 (MQ=255) tGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAg > 7:375610/1‑149 (MQ=255) gTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAg < 1:346959/147‑1 (MQ=255) ccAGCACCATGCGCACCACACGCAGTTCGGTCGGGAGTGAAATCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCCCCCGCTTGAACACCAGCTTGGCGGCGAGGATGAACAGCGAAGTGCCGCGCCGCgg > 1:66104/1‑149 (MQ=255) aGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAgg < 3:30160/120‑1 (MQ=255) aGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAgg > 4:30160/1‑120 (MQ=255) cACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCCAAGAAATTGTACACCAGCATGAACACCAGCATGGCGGCGAGGATGAAAACCGCAGTGCCCCGCAGCGGCTTgc > 4:427084/1‑148 (MQ=255) tGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCtt > 5:96263/1‑148 (MQ=255) gcgcACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGaa < 3:225167/93‑1 (MQ=255) gcgcACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGa > 4:153435/1‑149 (MQ=255) ccacACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATAGCCCCCAAAGAAAATGTCCAACAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAgg > 5:303956/1‑149 (MQ=255) acacGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACAACAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGtt > 5:264714/1‑149 (MQ=255) acGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGa < 3:427084/149‑1 (MQ=255) cGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCTGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAg < 3:858/149‑1 (MQ=255) gCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATAGCCGCCAAAGAAATTTTACACCAGCTTGAACACCAGCATGGGGGCGAGGATGGACACAGAAGTGGAGCGCAGCGGGGTGATAGTTACCAAGTTTAgg > 4:163899/1‑149 (MQ=255) aGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCg > 7:315830/1‑109 (MQ=255) aGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCg < 8:315830/109‑1 (MQ=255) cggtcggG‑GTGAACTCACGCCCTTCGCTCTTGGAGTGGCGGACATCGCCCCCAAAGAAATTGTGCACCCCCATGACCACCACATTGGGATCGAGGATGAACAGCGAAGTTCCGCGCCGCGGCTTGTACTTGACCAGGTTGAGGCtggtg > 8:128732/1‑149 (MQ=255) ggg‑gTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCAc < 3:273509/149‑1 (MQ=255) gg‑gTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACg > 5:344358/1‑149 (MQ=255) gTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTa < 8:114198/149‑1 (MQ=255) gTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTAGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTa < 6:285046/149‑1 (MQ=255) aaCTCACGCCCTTCGATCTTGGCGTGGGGGCCAACGCCCCCAAAAAAAATTTAAAACAACGTTAACACCCACTTGGGGGGGAGGTAGAACAACGAAGTTCCGCGCCGCGGGGTGGTATTTACCAGGGTGAGGGGGGGGGGGACggagag > 4:246001/1‑144 (MQ=255) aCTCACGCCCTTCGATCTTGGCGTGGCTGCCATCGCCGCCAAAGAAATTTTCCACCAGCTTGAACACCAGCTTGGCGTCGAGTATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGc < 4:253000/149‑1 (MQ=255) tCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGCGGATGCACAGCGAAGTGCCGCGCACCGGCTTGCTGATGACCAGGTTGCGGCTGGTGGGCACGTACAGc > 7:322870/1‑147 (MQ=255) aCGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGGCAAAGAAATTGTCCACCAGCTTGAACACCCGCTTGGCGGCGAGGAGGCACCGCGAAGTGCCGCGCAGCGGGTTGATATTGTCCAGGTTGAGGCTGGTGGGCCCGTACAGCgc > 6:136681/1‑146 (MQ=255) aCGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAg < 3:153435/148‑1 (MQ=255) aCGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGt > 8:299401/1‑149 (MQ=255) ccTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCAc < 5:261974/149‑1 (MQ=255) ccTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCAc < 3:282334/149‑1 (MQ=255) tCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCACGTa > 2:106615/1‑149 (MQ=255) atttctttggcgGCGATGGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCACGTa > 3:115330/8‑144 (MQ=255) atttctttggcgGCGATGGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCACGTa < 4:115330/137‑1 (MQ=255) tttctttggcgGCGATGGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCCGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCTGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCACGTATTCGcg > 3:90002/7‑148 (MQ=255) ggcgtggcgGCCATCGCCGCCAAAGAAATTGTCCACCAGGTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCACGTATTCGcc < 7:149494/147‑1 (MQ=255) ggcgtggcgGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCACGTATTc < 8:375610/144‑1 (MQ=255) ctttggcgGCGATGGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGAGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCACGTATTCGCCGaa > 4:74067/4‑149 (MQ=255) tggcgGCGATGGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCACGTATTCGCCGAAc < 1:22921/147‑1 (MQ=255) gcggcCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCACGTATTCGCCGAACTTc < 2:282087/148‑1 (MQ=255) gcggcCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCACGTATTCGCCGAACTTCa > 2:238913/1‑149 (MQ=255) gcggcCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGAACAGGTTGAGGCTGGTGGGCACGTACAGCGAGTTCACGTATTCGCCGAACTTc < 6:389329/148‑1 (MQ=255) cggcCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCACGTATTCGCCGAACTTCAt < 1:106615/149‑1 (MQ=255) cggcCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCACGTATTCGCCGAACTTCAt < 1:421490/149‑1 (MQ=255) ggcCATCGCCTACAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATc < 1:312308/89‑1 (MQ=255) gcccATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTAGGAGTCCAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATc > 2:312308/3‑89 (MQ=255) | CTCGGAGTTCATGTACTCGAAGCTGACCGGCATGATCGCCTGCCAGGCTTCCTTGAGGTCGACGAAACACTGGTCCAGCACCATGCGCACCACACGCAGTTCGGTCGGG‑GTGAACTCACGCCCTTCGATCTTGGCGTGGCGGCCATCGCCGCCAAAGAAATTGTCCACCAGCTTGAACACCAGCTTGGCGTCGAGGATGAACAGCGAAGTGCCGCGCAGCGGCTTGATCTTGACCAGGTTGAGGCTGGTGGGCACGTACAGCGAGTGCACGTATTCGCCGAACTTCAT > NC_002947/4949798‑4950085 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |