| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,118,197 | A→G | 6.9% | intergenic (+29/‑30) | PP_4504 → / → PP_4505 | hypothetical protein/sensor histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,118,197 | 0 | A | G | 6.9% | 193.7 / 4.9 | 72 | intergenic (+29/‑30) | PP_4504/PP_4505 | hypothetical protein/sensor histidine kinase |
| Reads supporting (aligned to +/- strand): ref base A (37/30); new base G (3/2); total (40/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.75e-01 | |||||||||||
TCACGGCTGACCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAG > NC_002947/5118053‑5118345 | tCACGGCTGACCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGc > 4:305498/1‑149 (MQ=255)tCACGGCTGACCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGc > 6:380859/1‑149 (MQ=255) aCGGCTGACCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGcgg > 3:80274/1‑149 (MQ=255) aCGGCTGACCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGc < 2:102503/147‑1 (MQ=255) gggtGACCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGACTCGCAGGAGTTCCAGGCCTGGAACGCTGAAAAGGGCGCCAAGGCCCCGTAAGCTGTCCGCCACATGCCCGCCCCGCATGACTGcgggc > 6:316627/4‑149 (MQ=255) gCTGACCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGcgggcc < 4:271283/149‑1 (MQ=255) accaccACAAGAAGTTTGCCGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCAGTGATGcgggccgg < 7:392616/147‑1 (MQ=255) aCCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGcgggccgggc > 5:104293/1‑149 (MQ=255) aCCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGcgggccgggc > 2:313998/1‑149 (MQ=255) aCCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGcgggccggg < 6:74706/148‑1 (MQ=255) ccAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGcgggccgggc < 7:402041/148‑1 (MQ=255) cagcagAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCAAGCCCGGCCCGCAGTGATGcgggccgggcat < 5:4591/149‑3 (MQ=255) aagaagTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCAGCATCACTGCGGGCCGGGCTTTTCCCg > 4:104574/1‑149 (MQ=255) agTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTa < 8:236092/149‑1 (MQ=255) gTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTag > 7:26539/1‑149 (MQ=255) aCGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGt > 7:56346/1‑149 (MQ=255) aCGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGt > 7:44823/1‑149 (MQ=255) cGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTg > 6:67413/1‑149 (MQ=255) cGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTg < 8:26539/149‑1 (MQ=255) gAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTg > 4:146456/1‑148 (MQ=255) cTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGc < 6:151819/146‑1 (MQ=255) cTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGc > 5:151819/1‑146 (MQ=255) cAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACtt < 3:146456/147‑1 (MQ=255) aaaaaGAACGCTCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATG‑CCAGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGt < 2:164808/149‑1 (MQ=255) aaaaaGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCg < 4:328289/149‑1 (MQ=255) aaaaGAACGCGCCGCCAAGAAAGTCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGt > 1:312813/1‑149 (MQ=255) aaaGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTagga < 2:293890/135‑1 (MQ=255) aaaGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTagga > 1:293890/1‑135 (MQ=255) aaaGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGtt < 8:368262/149‑1 (MQ=255) aaaGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTG‑AAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTGTTCCCGTTGAGGAGGTGCTCTTGCGtt > 8:140336/1‑148 (MQ=255) aaGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGtt > 8:351338/1‑148 (MQ=255) aGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCa < 6:104293/149‑1 (MQ=255) ccgccAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTg < 7:351338/149‑1 (MQ=255) cgccAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTgg < 3:44298/149‑1 (MQ=255) cgccAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTgg > 1:327648/1‑149 (MQ=255) ccAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGgcg > 5:63601/1‑149 (MQ=255) aaaGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTg < 5:181455/141‑1 (MQ=255) aaaGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTg > 6:181455/1‑141 (MQ=255) gCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTgg < 2:403132/149‑1 (MQ=255) ccGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGc < 6:63601/149‑1 (MQ=255) cGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGc > 8:339887/1‑148 (MQ=255) ggAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTctgg > 2:399429/1‑149 (MQ=255) ggAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTctgg < 5:67413/149‑1 (MQ=255) gAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTctggc > 4:130084/1‑149 (MQ=255) tCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCtggctggc > 6:181475/1‑149 (MQ=255) cAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGcc < 2:327648/148‑1 (MQ=255) aGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCT‑GCCAGTTTCTGGCTGGCCAt > 8:103692/1‑148 (MQ=255) ggCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATc < 3:130084/149‑1 (MQ=255) ggCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTAGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATc < 1:313998/149‑1 (MQ=255) gCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGGTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCa > 6:232919/1‑149 (MQ=255) gAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTg > 4:385785/1‑149 (MQ=255) aaGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGt < 8:48442/149‑1 (MQ=255) tGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCg > 2:249018/1‑147 (MQ=255) aaGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTctg < 2:379973/122‑1 (MQ=255) aaGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTctg > 1:379973/1‑122 (MQ=255) ggCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGt < 5:380859/149‑1 (MQ=255) gcgcCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTc > 7:389369/1‑149 (MQ=255) gcCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGa < 8:44823/149‑1 (MQ=255) ccAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGAt > 5:264277/1‑149 (MQ=255) ccAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCctgctg > 3:122748/1‑149 (MQ=255) ccAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGCCTGGCCATCACCCTGGTCGCATGCCTGTAGATCctgctg > 4:239106/1‑149 (MQ=255) gTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGCTCCTGCTgggg > 4:97770/1‑149 (MQ=255) tCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGc < 2:312813/148‑1 (MQ=255) tCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCt < 1:399429/149‑1 (MQ=255) cccATGCCCGGCCCGCATCACAGCGGGCCGGGCATTTCCCGTTTAAGAGGTGCACTTGCGTTAACTGTTATGGCGCATCCTGGCCAGTTTATGGCTGGCCAACACCCAGGTCGCAGGCCAGTCGATCCAGCTGGGGCACATGCACAAc > 8:272708/1‑148 (MQ=255) ccATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAAc > 7:39567/1‑147 (MQ=255) aTGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGAGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAgg > 3:382443/1‑149 (MQ=255) ccggcccgCAGTGATGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGc > 7:231428/1‑149 (MQ=255) ccggcccgCAGTGATGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGc > 6:369722/1‑149 (MQ=255) ccggcccgCAGTGATGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGc > 8:56512/1‑149 (MQ=255) cgCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGAt < 8:56346/149‑1 (MQ=255) gCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATc < 3:104574/149‑1 (MQ=255) aCTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAg < 5:181475/149‑1 (MQ=255) | TCACGGCTGACCAGCAGAAGAAGTTTGACGAACTGCAAAAAGAACGCGCCGCCAAGAAAGCCGAGTGGCAGGAGTTCCAGGCCTGGAAAGCTGAAAAAGGCGCCAAGGCCCAGTAAGCTGTCCGCCCCATGCCCGGCCCGCATCACTGCGGGCCGGGCTTTTCCCGTTTAGGAGGTGCACTTGCGTTCACTGTTCTGGCGCATCCTGGCCAGTTTCTGGCTGGCCATCACCCTGGTCGCAGGCCTGTCGATCCTGCTGGGGCACATGCTCAACCAGGACGCCTGGATCCTCAG > NC_002947/5118053‑5118345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |