Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	5,162,208	G→C	7.4%	A326P (GCT→CCT) ‡	PP_4544 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	5,162,208	0	G	C	7.4%	257.4 / 9.0	81	A326P (GCT→CCT) ‡	PP_4544	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (39/36);  new base C (3/3);  total (42/39)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01

GCAGTCGTTCGGCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCGGTTCGCGCGGTCACAAGTTCAAGGTCGGTTACG  >  NC_002947/5162060‑5162355                                                                                                                                                      |                                                                                                                                                     gCAGTCGTTCGGCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCctggctgg                                                                                                                                                      >  4:200237/1‑149 (MQ=255)  cAGTCGTTCGGCAACACCACCAACGAGTTCAATCTGTTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCctggctggc                                                                                                                                                     <  8:101254/149‑1 (MQ=255)  cAGTCGTTCGGCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCctggctgg                                                                                                                                                      <  3:326686/148‑1 (MQ=255)   aGTCGTTCGGCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCctggctggct                                                                                                                                                    >  3:220492/1‑149 (MQ=255)     tCGTTCGGCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCctggctggctgg                                                                                                                                                  <  4:293316/149‑1 (MQ=255)       gTTCGGCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGcc                                                                                                                                                <  8:362479/149‑1 (MQ=255)          cGGCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGGCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTg                                                                                                                                              <  2:156331/148‑1 (MQ=255)           ggCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGa                                                                                                                                             >  4:299969/1‑148 (MQ=255)           ggCAACACCACCAACGAGTTCAATCTGGTGGAAGCCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGATGGCCTGa                                                                                                                                             >  3:194554/1‑148 (MQ=255)            gCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGaaa                                                                                                                                           <  7:398231/149‑1 (MQ=255)            gCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGaa                                                                                                                                            >  6:36394/1‑148 (MQ=255)            gCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGaa                                                                                                                                            >  8:192757/1‑148 (MQ=255)                 accaccAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCa                                                                                                                                       >  4:419692/1‑148 (MQ=255)                 accaccAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCa                                                                                                                                       >  8:212613/1‑148 (MQ=255)                   caccaACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCaaaa                                                                                                                                    >  1:85994/1‑149 (MQ=255)                   caccaACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCAGCCAGCCAGGCCTGatcttcg                                                                                                                                       >  7:84604/1‑140 (MQ=255)                   caccaACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCAGCCAGCCAGGCCTGatcttcg                                                                                                                                       <  8:84604/146‑7 (MQ=255)                           aGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTgcc                                                                                                                            <  7:212613/149‑1 (MQ=255)                            gTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGTTCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTgcct                                                                                                                           >  5:373887/1‑149 (MQ=255)                                    tggtggAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCTTTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTgcctggagcctg                                                                                                                   <  6:415971/149‑1 (MQ=255)                                    tggtggAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTgcctggagcctg                                                                                                                   >  2:192265/1‑149 (MQ=255)                                      gtggAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGATGGCCTGAAAACCAAAATGGGTgcctggagcctgga                                                                                                                 <  4:194554/149‑1 (MQ=255)                                      gtggAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACATGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTgcctggagcctgga                                                                                                                 <  2:4760/149‑1 (MQ=255)                                      gtggAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTAGGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTgcctggagcct                                                                                                                    <  5:419224/146‑1 (MQ=255)                                       tggAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGTGTGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTgcctggagcctgga                                                                                                                 >  1:90706/1‑149 (MQ=255)                                         gAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑a                                                                                                             >  2:429566/1‑149 (MQ=255)                                                    ccAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACcgc                                                                                                   >  7:108822/1‑148 (MQ=255)                                                    ccAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACcgc                                                                                                   >  6:314470/1‑148 (MQ=255)                                                     cAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGa                                                                                                 >  8:229984/1‑149 (MQ=255)                                                     cAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGa                                                                                                 >  7:71072/1‑149 (MQ=255)                                                      aGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACcgcg                                                                                                  >  2:218667/1‑147 (MQ=255)                                                      aGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACcgcg                                                                                                  <  1:218667/147‑1 (MQ=255)                                                      aGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGAt                                                                                                >  1:41489/1‑149 (MQ=255)                                                      aGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGAt                                                                                                <  4:220492/149‑1 (MQ=255)                                                        aTCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGAtgt                                                                                              <  4:37803/149‑1 (MQ=255)                                                         tCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGAtgtg                                                                                             >  7:136961/1‑149 (MQ=255)                                                         tCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGAtgtg                                                                                             <  8:108822/149‑1 (MQ=255)                                                         tCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATAGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGAtgtg                                                                                             <  1:413648/149‑1 (MQ=255)                                                           gACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCa                                                                                           <  8:71072/149‑1 (MQ=255)                                                            aCTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAg                                                                                          >  6:240469/1‑149 (MQ=255)                                                                     gCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAAcgcg                                                                                 >  1:202721/1‑149 (MQ=255)                                                                     gCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAAcg                                                                                   <  2:85994/147‑1 (MQ=255)                                                                         ggCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCggtg                                                                              <  3:200237/148‑1 (MQ=255)                                                                          gCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCggtggt                                                                            <  2:41283/149‑1 (MQ=255)                                                                          gCCATTCCGT‑TGTCGGCCTATGGCCAGTACCTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCggtggt                                                                            >  1:41283/1‑149 (MQ=255)                                                                                ccGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCAGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGcc                                                                       <  5:36394/148‑1 (MQ=255)                                                                                 cGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGAGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTg                                                                     >  3:135815/1‑149 (MQ=255)                                                                                   t‑tGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGtt                                                                   <  6:373887/149‑1 (MQ=255)                                                                                      gTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTc                                                                  <  3:49811/148‑1 (MQ=255)                                                                                       tCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCAc                                                                <  5:150941/149‑1 (MQ=255)                                                                                          gCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCggtgg                                                                             <  7:399702/133‑1 (MQ=255)                                                                                          gCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCggtgg                                                                             >  8:399702/1‑133 (MQ=255)                                                                                              caagCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCg                                                         <  8:192989/146‑1 (MQ=255)                                                                                              aTGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCg                                                         >  1:55748/1‑149 (MQ=255)                                                                                               tGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCg                                                         <  2:274359/148‑1 (MQ=255)                                                                                                 gCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGa                                                       <  7:229984/148‑1 (MQ=255)                                                                                                 gCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGAc                                                      <  2:90706/149‑1 (MQ=255)                                                                                                    aGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTc                                                   >  2:8976/1‑149 (MQ=255)                                                                                                     gTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCg                                                         <  4:225238/142‑1 (MQ=255)                                                                                                     gTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCg                                                         >  3:225238/1‑142 (MQ=255)                                                                                                         gTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCAc                                                                >  4:312760/1‑131 (MQ=255)                                                                                                         gTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCAc                                                                <  3:312760/131‑1 (MQ=255)                                                                                                          tGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAAc                                             >  2:259659/1‑149 (MQ=255)                                                                                                           gaagaaCACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACg                                            >  1:118934/1‑149 (MQ=255)                                                                                                           gaagaaCACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACg                                            >  4:234097/1‑149 (MQ=255)                                                                                                                acacCGACAGCGCCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTac                                       <  2:123847/149‑1 (MQ=255)                                                                                                                  acCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTacac                                     >  5:434779/1‑149 (MQ=255)                                                                                                                   ccGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACAcc                                    >  7:27552/1‑149 (MQ=255)                                                                                                                       cAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCGGtt                                <  3:419692/149‑1 (MQ=255)                                                                                                                           aCCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCg                                   >  6:300658/1‑142 (MQ=255)                                                                                                                           aCCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCg                                   <  5:300658/142‑1 (MQ=255)                                                                                                                            ccGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCGGTTcgcgc                           <  2:332702/149‑1 (MQ=255)                                                                                                                                 ggCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACTAACAAATACCGCGATTTGCAGCGAAACGCGTTGGTCAGCGTGTTCACCCATTCGGAATTCGGCAACGGCTAAACCGGTTCGCGCGGt                        >  1:124891/1‑148 (MQ=255)                                                                                                                                  gCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCGGTTCGCGCGGTcac                     <  7:192757/149‑1 (MQ=255)                                                                                                                                    gAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCGGTTCGCGCGGTcac                     >  3:133460/1‑147 (MQ=255)                                                                                                                                    gAAGATCAGGCCTGACTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCGGTTCGCGCGGTcac                     >  4:140973/1‑147 (MQ=255)                                                                                                                                       tttCAGGCCAGCCAGCCAGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCg                                                  <  8:178718/113‑1 (MQ=255)                                                                                                                                       tttCAGGCCAGCCAGCCAGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCg                                                  >  7:178718/3‑115 (MQ=255)                                                                                                                                       tttCAGGCCAGCCAGCCAGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAAc                                             <  2:121931/118‑1 (MQ=255)                                                                                                                                       tttCAGGCCAGCCAGCCAGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAAc                                             >  1:121931/3‑120 (MQ=255)                                                                                                                                         tCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCgg                                                        <  1:352430/107‑1 (MQ=255)                                                                                                                                         tCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCgg                                                        >  2:352430/1‑107 (MQ=255)                                                                                                                                           aGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCGGTTCGCGCGGTCACAAGTTCAAg            <  6:308167/149‑1 (MQ=255)                                                                                                                                             gCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCGGTTCGCGCGGTCACAAGTTCAAGGt          >  6:373656/1‑149 (MQ=255)                                                                                                                                             gCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCGGTTCGCGCGGTCACAAGTTCAAGGt          >  8:53044/1‑149 (MQ=255)                                                                                                                                              ccTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCGGTTCGCGCGGTCACAAGTTCAAGGTc         <  8:27552/149‑1 (MQ=255)                                                                                                                                               ctggctggctggCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCGGTTCGCGCGGTCACAAGTTCAAGGTCg        <  5:314470/149‑1 (MQ=255)                                                                                                                                                tggctggctggcCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCGGTTCGCGCGGTCACAAGTTCAAGGTCgg       >  1:98717/1‑149 (MQ=255)                                                                                                                                                      gctggcCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCGGTTCGCGCGGTCACAAGTTCAAGGTCGGTTAc   <  2:55748/147‑1 (MQ=255)                                                                                                                                                      gctggcCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCGGTTCGCGCGGTCACAAGTTCAAGGTCGGTTACg  <  5:240469/148‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GCAGTCGTTCGGCAACACCACCAACGAGTTCAATCTGGTGGAAGGCTTTGGCCAGATCGACTTCACTGGCTTGGCCATTCCGT‑TGTCGGCCTATGGCCAGTACGTGAAGAACACCGACAGCACCGACGGCGAAGATCAGGCCTGGCTGGCTGGCCTGAAAACCAAAATGGGTGCCTGGAGCCTGGACT‑ACAACTACCGCGATGTGCAGCGTAACGCGGTGGTCAGCCTGTTCACCGATTCGGACTTCGGCAACGGCTACACCGGTTCGCGCGGTCACAAGTTCAAGGTCGGTTACG  >  NC_002947/5162060‑5162355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑