| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,254,520 | T→A | 7.1% | I38I (ATA→ATT) ‡ | PP_4630 ← | MerR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,254,520 | 0 | T | A | 7.1% | 248.1 / 5.9 | 83 | I38I (ATA→ATT) ‡ | PP_4630 | MerR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (38/39); new base A (2/4); total (40/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
CCTGCCCGGAGAGCGCATTGTCGCGAGCGAGAATGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCATCGATCACCGGTTTACGTCCCTGCTCGTTCATCTGCACGAAG > NC_002947/5254372‑5254667 | ccTGCCCGGAGAGCGCATTGTCGCGAGCGAGAATGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGt < 2:317311/149‑1 (MQ=255) cTGCCCGGAGAGCGCATTGTCGCGAGCGAGAATGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTa > 2:306250/1‑149 (MQ=255) cGGAGAGCGCATTGTCGCGAGCGAGAATGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGc < 5:367206/149‑1 (MQ=255) gagaGCGCATTGTCGCGAGCGAGAATGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGcc > 3:377023/1‑148 (MQ=255) gagCGCATTGTCGCGAGCGAGAATGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGATACAGCCCA‑t < 6:268801/149‑1 (MQ=255) agCGCATTGTCGCGAGCGAGAATGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGATACAGCCCA‑tc < 3:372719/149‑2 (MQ=255) gagcATTGTCGCGAGCGAGAATGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCAGATACAGCCCA‑tcc < 5:61705/147‑3 (MQ=255) gcATTGTCGCGAGCGAGAATGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACg < 4:352855/149‑1 (MQ=255) cATTGTTGCGAGCGAGAATGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGATACAGCCCA‑tccgta < 7:87315/149‑6 (MQ=255) aTTGTCGCGAGCGAGAATGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGc > 1:201835/1‑149 (MQ=255) aTTGTCGCGAGCGAGAATGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGc < 8:74874/149‑1 (MQ=255) aTTGTCGCGAGCGAGAATGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGc < 8:70111/149‑1 (MQ=255) gagcgagAATGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAg > 7:92566/1‑149 (MQ=255) aaTGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGaa < 6:375738/149‑1 (MQ=255) tgctgcTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAgg < 3:230886/149‑1 (MQ=255) atgcgctCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAgg < 8:258484/145‑1 (MQ=255) gctgctCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAggg > 2:375678/1‑149 (MQ=255) ctgctCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGATGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAggg > 5:72590/1‑148 (MQ=255) ctgctCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAggg < 7:265111/148‑1 (MQ=255) gctCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGCCCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCa > 5:363038/1‑149 (MQ=255) ctCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCa < 8:102496/148‑1 (MQ=255) ctCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCAc > 4:35898/1‑149 (MQ=255) aCCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGc > 2:145767/1‑149 (MQ=255) cTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGt < 3:35898/149‑1 (MQ=255) cTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGt > 8:209802/1‑149 (MQ=255) tGCTGACCGCCACGCAGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTg > 6:205720/1‑149 (MQ=255) gCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAg < 5:25416/127‑1 (MQ=255) gCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAg > 6:25416/1‑127 (MQ=255) gCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAg < 5:359398/135‑1 (MQ=255) gCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAg > 6:359398/1‑135 (MQ=255) gCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGtt < 8:155204/147‑1 (MQ=255) cTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGa < 3:334161/148‑1 (MQ=255) tGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGACTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGaca > 5:69062/1‑149 (MQ=255) aCCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACAcc > 7:163351/1‑149 (MQ=255) ccGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCg < 4:241988/149‑1 (MQ=255) cGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTAATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGACCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCgg > 7:391754/1‑149 (MQ=255) cgccgcGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TACACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCaa < 1:90703/149‑1 (MQ=255) cgccgcGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAg > 2:203759/1‑149 (MQ=255) cgcTCCAGCCACCCGAGGATACGGCTGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTAGGGATGGGCTGTATCAGCCCA‑TA‑ATGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGa < 1:321748/149‑1 (MQ=255) cgcTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGa < 4:377023/149‑1 (MQ=255) cgcTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGa < 7:57891/149‑1 (MQ=255) cgcTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGa < 1:168196/149‑1 (MQ=255) tCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGacac > 4:270704/1‑149 (MQ=255) tCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGacac > 1:414310/1‑149 (MQ=255) tCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGacac > 8:112510/1‑149 (MQ=255) ccAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCaa > 4:419611/1‑139 (MQ=255) ccAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCaa < 3:419611/139‑1 (MQ=255) aGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACtt > 8:339480/1‑148 (MQ=255) gCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCa > 5:76126/1‑149 (MQ=255) ccGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAAt > 4:399867/1‑149 (MQ=255) ccGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAAt < 8:129260/149‑1 (MQ=255) gAGGATCCGGCTGATTTCCTCGATAGCAGCCAGGGATTCGAGGCGGTGACCACTGTCGGTACGTATCGGCTGTATGAGCCCA‑TA‑ACGGCCTTCGCTGGCCCGAAGGGTCACGGCGTTGAGACCTGTCAAGGCTGACTCTTCACGAATCg < 4:203715/149‑1 (MQ=255) gAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGACTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCg < 6:69062/149‑1 (MQ=255) aGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCgg < 1:203759/149‑1 (MQ=255) aGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCgg < 7:209802/149‑1 (MQ=255) aGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCgg < 1:281862/149‑1 (MQ=255) aTACGGCGGATTTCATCGATATCAGCCAGGGACTACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGaaa < 8:198791/149‑1 (MQ=255) aTACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGaaa < 7:339480/149‑1 (MQ=255) ggcggATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGc < 8:92566/149‑1 (MQ=255) tttCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCctgc < 6:26472/149‑1 (MQ=255) tttCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCctg < 6:72590/148‑1 (MQ=255) tCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCAA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCctgct > 3:28520/1‑148 (MQ=255) aTCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTgctgct > 5:391958/1‑149 (MQ=255) aTCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTgctgct < 2:244606/149‑1 (MQ=255) atatCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGa > 6:35007/1‑148 (MQ=255) tatCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGaaa < 4:202393/149‑1 (MQ=255) aGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCg > 1:298346/1‑149 (MQ=255) aGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAACCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTc < 1:306250/148‑1 (MQ=255) ccAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCa < 3:270704/149‑1 (MQ=255) aGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCATc > 6:299854/1‑149 (MQ=255) aCAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCctgctg > 1:408355/1‑127 (MQ=255) aCAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCctgctg < 2:408355/127‑1 (MQ=255) aGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCATCGATCACCgg > 3:25121/1‑149 (MQ=255) ggTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCATCGATCACCGGTTTa > 4:130798/1‑149 (MQ=255) aCCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCATCGATCACCGGTTTACGTc > 2:93061/1‑149 (MQ=255) cACTGTCGGTACGGATGGGCTGTATCAGCCCAGTA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCATCGATCACCGGTTTACGTcc > 1:272712/1‑149 (MQ=255) tCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCATCGATCACCGGTTTACGTCCCTGc < 5:252991/147‑1 (MQ=255) gTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGTGTTGACACCCGTCAAGCGTCACACTTAACGAATCGGAAACAGCTCCTCCTGCTCCAAACTAGCAACCATCACCGGTTTACGTCACTGCTCGt > 5:244141/1‑148 (MQ=255) aCGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCATCGATCACCGGTTTACGTCCCTGCTCGTTCa > 3:93064/1‑149 (MQ=255) taTGGGCTGATACAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCATCGATCACCGGTTTACGTCCCTGCTCGTTCATCt > 1:371373/2‑149 (MQ=255) gATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCATCGATCACCGGTTTACGTCCCTGCTCGTTCATCt < 5:299854/149‑1 (MQ=255) aTGGGCTGATACAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCATCGATCACCGGTTTACGTCCCTGCTCGTTCATCTg > 2:69349/1‑149 (MQ=255) ggCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCATCGATCACCGGTTTACGTCCCTGCTCGTTCATCTGCAc > 4:19397/1‑149 (MQ=255) gCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCATCGATCACCGGTTTACGTCCCTGCTCGTTCATCTGCAc > 5:217121/1‑148 (MQ=255) tATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCATCGATCACCGGTTTACGTCCCTGCTCGTTCATCTGCACGAAg < 5:205720/148‑1 (MQ=255) | CCTGCCCGGAGAGCGCATTGTCGCGAGCGAGAATGCTGCTCACCTTGCTGACCGCCACGCCGCGCTCCAGCCACCCGAGGATACGGCGGATTTCATCGATATCAGCCAGGGAATACAGGCGGTGACCACTGTCGGTACGGATGGGCTGTATCAGCCCA‑TA‑ACGGCGTTCCCAGGCGCGAAGGGTCACGGCGTTGACACCGGTCAAGCGTGACACTTCACGAATCGGAAACAGCTCCTGCTGCTCGAAACTCGCATCGATCACCGGTTTACGTCCCTGCTCGTTCATCTGCACGAAG > NC_002947/5254372‑5254667 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |