| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,486,712 | T→A | 5.1% | L14* (TTG→TAG) | PP_4824 → | two‑component system sensor histidine kinase/response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,486,712 | 0 | T | A | 5.1% | 249.0 / 2.2 | 78 | L14* (TTG→TAG) | PP_4824 | two‑component system sensor histidine kinase/response regulator |
| Reads supporting (aligned to +/- strand): ref base T (36/38); new base A (2/2); total (38/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.91e-01 | |||||||||||
CCTGCGGCATCCGGCTCGTCGACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCCTCTCGCCGAC > NC_002947/5486566‑5486857 | ccTGCGGCATCCGGCTCGTCGACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGc > 7:218701/1‑149 (MQ=255) cTGCGGCATCCGGCTCGTCGACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCt > 3:231607/1‑149 (MQ=255) ccGGCTCGTCGACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCCGATTGCCTCAGCTCTGATCGACAGCTTGCTGACCCAGc‑t > 2:422909/1‑149 (MQ=255) cGGCTCGTCGACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCAAGCTGAcgatcag < 8:278758/148‑7 (MQ=255) ggCTCGTCGACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGc‑tct > 8:318128/1‑149 (MQ=255) tcgtcgACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCa < 8:375890/149‑1 (MQ=255) gtcgACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCa < 2:417821/147‑1 (MQ=255) gACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGttt > 2:437523/1‑149 (MQ=255) cAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTcc < 4:145655/149‑1 (MQ=255) aGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCg > 2:337677/1‑149 (MQ=255) gggCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCgg < 4:354910/149‑1 (MQ=255) gggCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCgg < 4:360962/149‑1 (MQ=255) ggCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGc > 2:152121/1‑149 (MQ=255) gCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCt > 4:265878/1‑149 (MQ=255) cGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCg > 8:4425/1‑149 (MQ=255) aaTGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGcc < 8:87604/149‑1 (MQ=255) aTGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCg < 4:356410/149‑1 (MQ=255) ggCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGaa < 2:363999/148‑1 (MQ=255) ccttgccttCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACAt < 4:231607/149‑1 (MQ=255) ccttgccttCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACAt > 5:41748/1‑149 (MQ=255) cttCGACTTGGCGCGCCGAGGATAGTGAGTACCCGGCTCATGGGCCAAGAAGGGATTTCGTAGTGGGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCtt < 5:129306/103‑1 (MQ=255) ttCGACTTGGCGCACCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTg > 2:161687/1‑149 (MQ=255) cGACTTGGCGCGCCGCGCATAGTGAGTACCCGTCACATCTGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTgg < 3:237944/148‑1 (MQ=255) gACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCt < 1:62376/149‑1 (MQ=255) aCTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTg < 7:318128/149‑1 (MQ=255) cTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTg < 5:209191/148‑1 (MQ=255) cTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTg > 6:209191/1‑148 (MQ=255) ttGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGa > 5:430568/1‑149 (MQ=255) ggCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGa < 3:422091/147‑1 (MQ=255) ggCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGAc < 5:114575/148‑1 (MQ=255) gcgcgcCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCg > 7:108188/1‑149 (MQ=255) gcgcacCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGAcc < 1:161687/148‑1 (MQ=255) cgcgccgcgcATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGt > 8:238201/1‑149 (MQ=255) ccgcgcATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTg < 7:238201/149‑1 (MQ=255) cgcATAGTGATTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTc < 1:152121/149‑1 (MQ=255) cgcATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTc < 4:55638/149‑1 (MQ=255) tAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGCTTCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTcgac < 1:337677/149‑1 (MQ=255) aGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTcgacg > 8:352690/1‑148 (MQ=255) tGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGaa > 4:251176/1‑148 (MQ=255) tGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAAc < 6:430568/149‑1 (MQ=255) aGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAg > 5:169217/1‑149 (MQ=255) gTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAgg < 3:404369/149‑1 (MQ=255) cccGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGcc > 6:172264/1‑148 (MQ=255) cccGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGcc > 5:190582/1‑148 (MQ=255) ccGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCaa > 5:136188/1‑149 (MQ=255) cGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAAc < 1:397498/149‑1 (MQ=255) ggCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACt > 7:5394/1‑148 (MQ=255) cAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAAc > 6:360943/1‑137 (MQ=255) cAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAAc < 5:360943/137‑1 (MQ=255) gggATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGAtgtg < 8:108188/149‑1 (MQ=255) ggATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTgc < 3:265878/149‑1 (MQ=255) aTTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTgcga > 6:291499/1‑148 (MQ=255) cGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCAGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTcc > 6:395881/1‑148 (MQ=255) gTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAgcg < 1:437523/149‑1 (MQ=255) cGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCt < 4:13058/101‑1 (MQ=255) cGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCt > 3:13058/1‑101 (MQ=255) cGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTa > 7:157594/1‑149 (MQ=255) gTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTAt < 5:172264/149‑1 (MQ=255) gTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTAt > 4:128209/1‑149 (MQ=255) ggCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGc < 6:140758/149‑1 (MQ=255) cTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAgcg > 6:202983/1‑140 (MQ=255) cTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAgcg < 5:202983/140‑1 (MQ=255) cTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCaa < 4:61793/149‑1 (MQ=255) ggATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCACTCCGAGCGCTATCGCAACCa < 7:352690/148‑1 (MQ=255) gATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGt > 1:328575/1‑149 (MQ=255) aTTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGtt > 7:158437/1‑149 (MQ=255) gCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCa < 3:251176/148‑1 (MQ=255) tCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGcc > 3:36163/1‑148 (MQ=255) agggTCAGCAAGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGcc > 1:363062/4‑146 (MQ=255) agggTCAGCAAGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGcc < 2:363062/143‑1 (MQ=255) agggTCAGCAAGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCctct > 6:420646/4‑149 (MQ=255) aTCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCctct > 7:223310/1‑149 (MQ=255) tCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTgcgc > 4:209465/1‑107 (MQ=255) tCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTgcgc < 3:209465/107‑1 (MQ=255) aGCTTGCTGACCCTGG‑TCTGGATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGTCCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCCTCTCGCCg < 1:422909/148‑1 (MQ=255) aGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCCTCTCGCCGa < 6:190582/149‑1 (MQ=255) gCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCCTCTCGCCGAc > 5:142344/1‑149 (MQ=255) gCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCCTCTCGCCGAc > 3:50137/1‑149 (MQ=255) gCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCCTCTCGCCGAc < 8:5394/149‑1 (MQ=255) | CCTGCGGCATCCGGCTCGTCGACAGGGCCCGGAATGGGCCTTGCCTTCGACTTGGCGCGCCGCGCATAGTGAGTACCCGGCACATCGGCCAAGAAGGGATTTCGTAGTGCGTCGGCTTCGGATTGCCTCAGCTCTGATCGTCAGCTTGCTGACCCTGC‑TCTGCATGTTTCCGGCTGCGGCCGAACATGACGGTGGCTGGACCGTTCTGCTCGACGAACAGGCCAACCTGCAACTGAGCGATGTGCGCTCCGAGCGCTATCGCAACCAGTTCAGCCCACTGCCTCTCGCCGAC > NC_002947/5486566‑5486857 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |