BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	5,503,148	C→A	5.5%	P33H (CCT→CAT) ‡	oprC →	copper receptor OprC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	5,503,148	0	C	A	5.5%	344.5 / 8.1	109	P33H (CCT→CAT) ‡	oprC	copper receptor OprC
Reads supporting (aligned to +/- strand): ref base C (53/49); new base A (3/3); total (56/53)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.69e-02

Only 100 of 113 total aligned reads displayed.

ACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCAGCGACGGCGCCGACTACCTGAAG  >  NC_002947/5503000‑5503296

aCGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGccc                                                                                                                                                      >  1:51710/1‑149 (MQ=255)

  gAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTg                                                                                                                                                    <  4:318047/149‑1 (MQ=255)

  gAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCATGTTTTTGCCTAGTCCCTGCGTGGGACCAACGCCCCCCAGAGCGGCTCGCTGATCGCGCCCATGGCCCTGGCCGCCGccccag                                                                                                                                                    >  7:151243/1‑147 (MQ=255)

   caGCCAGGAGGCTTCGCGCTAACTCATGACTGCTCGACTGGAATCATTATGTCCGGCGGC‑ACCCCTGTTTGTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCGGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTgg                                                                                                                                                   <  3:170818/148‑1 (MQ=255)

    aGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGc                                                                                                                                                  <  1:158879/149‑1 (MQ=255)

    aGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGc                                                                                                                                                  >  8:384377/1‑149 (MQ=255)

    aGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGc                                                                                                                                                  <  7:7912/149‑1 (MQ=255)

     gCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGcc                                                                                                                                                 <  2:258633/149‑1 (MQ=255)

     gCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGc                                                                                                                                                  >  2:149457/1‑148 (MQ=255)

     gCCAGGAGGCTTCGCGCTAACCCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGcc                                                                                                                                                 <  2:134869/149‑1 (MQ=255)

        aggaggCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCAt                                                                                                                                               >  3:83448/1‑148 (MQ=255)

          gaggCTTCGTGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCACTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATg                                                                                                                                              >  8:359855/1‑147 (MQ=255)

          gaggCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGaa                                                                                                                                            <  7:411576/149‑1 (MQ=255)

          gaggCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGaa                                                                                                                                            <  2:51710/149‑1 (MQ=255)

             gCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCAGGGCCGGCGGCCAGGGCCATggg                                                                                                                                            >  3:21069/1‑144 (MQ=255)

             gCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCAGGGCCGGCGGCCAGGGCCATggg                                                                                                                                            <  4:21069/146‑3 (MQ=255)

                    gcTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGc                                                                                                                                  <  1:99819/149‑1 (MQ=255)

                     cTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCa                                                                                                                                 >  5:268318/1‑149 (MQ=255)

                            aTGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTCCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCa                                                                                                                          >  8:298210/1‑149 (MQ=255)

                              gACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCAcc                                                                                                                        >  2:57589/1‑149 (MQ=255)

                                cTGATCGACTGGAATCATTATGTCCGGCTGCAACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCAccc                                                                                                                       >  1:265751/1‑149 (MQ=255)

                                   aTCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGt                                                                                                                   >  7:125374/1‑149 (MQ=255)

                                       aCTGGAATCATTATGTCCGGCTGC‑CCCCCTGTATTTGCCTTGTCCCTGCGTGGGACCATCGCCGAACTGTGAGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCAATGAAGACCATGTGCACGACGAACACGAGTTGAg                                                                                                               >  5:304060/1‑149 (MQ=255)

                                        cTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGc                                                                                                              >  3:73626/1‑149 (MQ=255)

                                           gAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCTTGAAGACCATGTGCACGACGCACCCGAGTTGAGccc                                                                                                            >  4:207057/1‑148 (MQ=255)

                                           gAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGcc                                                                                                             <  2:265751/147‑1 (MQ=255)

                                           gAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCCAGTTGAGCCCg                                                                                                           >  3:337278/1‑149 (MQ=255)

                                            aaTCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGAACGACGCACCCGAGTTAAGACCGa                                                                                                          >  8:402379/1‑149 (MQ=255)

                                             aTCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGAc                                                                                                         >  5:258519/1‑149 (MQ=255)

                                              tCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACg                                                                                                        >  8:326635/1‑149 (MQ=255)

                                              tCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACg                                                                                                        >  8:370347/1‑149 (MQ=255)

                                                aTTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGt                                                                                                      <  7:298210/149‑1 (MQ=255)

                                                 ttATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTg                                                                                                     <  7:402379/149‑1 (MQ=255)

                                                    tGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCGCTGTGCGGCTCGCTGCTCGCGCCCATGGCGCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGAGGGTGATc                                                                                                  <  6:216752/149‑1 (MQ=255)

                                                    tGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGAt                                                                                                   >  4:293353/1‑148 (MQ=255)

                                                      tCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCa                                                                                                 <  3:293353/148‑1 (MQ=255)

                                                           cTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCAccgccg                                                                                           >  7:86476/1‑149 (MQ=255)

                                                            tGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGCCCGCCGGCCCTGGCCAGGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGt                                                                                          >  5:154614/1‑149 (MQ=255)

                                                             gC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTg                                                                                         >  7:132471/1‑149 (MQ=255)

                                                                  cccTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGccc                                                                                     >  8:150497/1‑149 (MQ=255)

                                                                   ccTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGcccc                                                                                    <  8:125374/149‑1 (MQ=255)

                                                                   ccTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGcccc                                                                                    <  7:336315/149‑1 (MQ=255)

                                                                   ccTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGcccc                                                                                    <  4:363061/149‑1 (MQ=255)

                                                                    cTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGcccc                                                                                    >  5:90502/1‑148 (MQ=255)

                                                                    cTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGcccc                                                                                    >  7:264030/1‑148 (MQ=255)

                                                                     tGTTTTTGCCTTGTCCGTGCGTGGGACCATGGCCGCCGTGTGGTGCTCGCTGCTCGGGCCCATGGCACTGGCCGCCGTCCCTGGCCATGAAGACCATGTTCACGACGCTCCCGAGTTTAGCCCGACGGTGATCACCGCCGTGGCCCCGa                                                                                  <  4:337278/149‑1 (MQ=255)

                                                                       tttttGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGt                                                                                >  1:355125/1‑149 (MQ=255)

                                                                       tttttGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGt                                                                                >  7:260297/1‑149 (MQ=255)

                                                                             ccTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCCCCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTcgccg                                                                          >  5:37030/1‑149 (MQ=255)

                                                                             ccTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGCCCCCGAGTTcgccg                                                                          <  7:370347/149‑1 (MQ=255)

                                                                              cTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTcgccgc                                                                         >  8:212015/1‑149 (MQ=255)

                                                                              cTTGTCCCTGCGTGGGACCAGCGCCGCCCTGTTCGGATCGATTCTCCCGCCCATGGCCCTGGCCGCCGGCCCTGTCCATGAAGACCATGTGAACGACGCACCCGAGTTGAGCCCTACGGTGATCACCGCCGTGGCCCCGAGTTcgccgc                                                                         <  6:304060/149‑1 (MQ=255)

                                                                                 gTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTg                                                                       <  4:73626/148‑1 (MQ=255)

                                                                                    ccTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACtg                                                                   >  6:322834/1‑149 (MQ=255)

                                                                                      tGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTcgc                                                                            <  5:184072/138‑1 (MQ=255)

                                                                                      tGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTcgc                                                                            >  6:184072/1‑138 (MQ=255)

                                                                                      tGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACtgtg                                                                 >  8:212353/1‑149 (MQ=255)

                                                                                        cGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACtgtg                                                                 <  6:90502/147‑1 (MQ=255)

                                                                                              aCCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCaa                                                         >  3:283361/1‑149 (MQ=255)

                                                                                               ccATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAAc                                                        >  7:408816/1‑149 (MQ=255)

                                                                                                cATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAAcc                                                       >  6:118242/1‑149 (MQ=255)

                                                                                                 aTCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAAccc                                                      <  7:212015/149‑1 (MQ=255)

                                                                                                   cgccgcCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCg                                                     >  7:38518/1‑148 (MQ=255)

                                                                                                    gccgccCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGaa                                                   <  8:38518/149‑1 (MQ=255)

                                                                                                    gccgccCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGa                                                    <  3:422987/148‑1 (MQ=255)

                                                                                                    gccgccCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGCGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGa                                                    <  1:149457/148‑1 (MQ=255)

                                                                                                      cgccCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAg                                                 <  5:130251/149‑1 (MQ=255)

                                                                                                        cccTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCTTGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGAc                                               <  3:207057/149‑1 (MQ=255)

                                                                                                                ggCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCgcca                                       <  5:39476/149‑1 (MQ=255)

                                                                                                                 gCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCCTGAAGACCATGTGCACGGCGCACCCGAGTTGAGCCCGCCGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCgccag                                      >  5:302898/1‑149 (MQ=255)

                                                                                                                 gCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCgccag                                      >  8:16269/1‑149 (MQ=255)

                                                                                                                     gctgctCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAAcc                                                       <  4:404298/128‑1 (MQ=255)

                                                                                                                     gctgctCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAAcc                                                       >  3:404298/1‑128 (MQ=255)

                                                                                                                      ctgctCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGt                                 <  7:326635/149‑1 (MQ=255)

                                                                                                                      ctgctCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGt                                 <  7:359855/149‑1 (MQ=255)

                                                                                                                           cgcgCCCATGGCCCTGGCCGCCCGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCACCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCgg                            >  7:64025/1‑149 (MQ=255)

                                                                                                                            gcgcCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCg                             <  8:260297/147‑1 (MQ=255)

                                                                                                                            gcgcCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGc                           >  1:101487/1‑149 (MQ=255)

                                                                                                                            gcgcCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGc                           <  8:264030/149‑1 (MQ=255)

                                                                                                                             tcttcATGGCCAGGGCCGGCGGCCAGGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGa                                                    <  3:37885/119‑1 (MQ=38)

                                                                                                                             tcttcATGGCCAGGGCCGGCGGCCAGGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGa                                                    >  4:37885/5‑123 (MQ=38)

                                                                                                                              gcCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGc                           >  1:402239/1‑147 (MQ=255)

                                                                                                                              gcCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCa                         <  1:57589/149‑1 (MQ=255)

                                                                                                                                ccATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGCCCCGCGCCAGCCAGTGCCGGCCAGc                       >  1:250305/1‑149 (MQ=255)

                                                                                                                                   tcgCCCGGTCCGCCGGCCCTGTCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGGCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCAGCGAc                    <  6:302898/147‑1 (MQ=255)

                                                                                                                                   tGGCCAGGGCCGGCGGCCAGGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCgccagc                                     <  6:349934/132‑1 (MQ=255)

                                                                                                                                   tGGCCAGGGCCGGCGGCCAGGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCgccagc                                     >  5:349934/1‑132 (MQ=255)

                                                                                                                                     gcgcTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGTTCACCGCCGTGGCGCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCAGCGACg                   <  6:258519/145‑1 (MQ=255)

                                                                                                                                     gCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCTGCCAGCGACgg                  >  2:109842/1‑149 (MQ=255)

                                                                                                                                     gCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCAGCGACgg                  <  5:177882/149‑1 (MQ=255)

                                                                                                                                         tGGCCGCCGGCCCTGGCCATGAAGACCATGTGAACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCAGCGACGGCGcc              >  1:267740/1‑149 (MQ=255)

                                                                                                                                           gccgccGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCAGCGACGGcgacga            >  8:116003/1‑149 (MQ=255)

                                                                                                                                           gccgccGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCAGCGACGGCGCCGa            <  7:150497/149‑1 (MQ=255)

                                                                                                                                             cgccgGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCAGCGACGGCGCCGAc           >  6:50604/1‑148 (MQ=255)

                                                                                                                                             cgccgGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCAGCGACGGCGCCGACt          <  7:16269/149‑1 (MQ=255)

                                                                                                                                              gccgGCCCTGGCCATGAAGACCATGTACACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCAGCGACGGCGCCGACTa         >  6:183010/1‑149 (MQ=255)

                                                                                                                                                cgGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCAGCGACGGCGCCGACTAcc       <  8:114112/149‑1 (MQ=255)

                                                                                                                                                  gCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCAGCGACGGCGCCGACTACCTg     <  4:83448/149‑1 (MQ=255)

                                                                                                                                                    ccTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCAGCGACGGCGCCGACTACCTg     >  8:231224/1‑147 (MQ=255)

                                                                                                                                                     cTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCAGCGACGGCGCCGACTACCTGAAg  >  8:223472/1‑149 (MQ=255)

ACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGC‑ACCCCTGTTTTTGCCTTGTCCCTGCGTGGGACCATCGCCGCCCTGTGCGGCTCGCTGCTCGCGCCCATGGCCCTGGCCGCCGGCCCTGGCCATGAAGACCATGTGCACGACGCACCCGAGTTGAGCCCGACGGTGATCACCGCCGTGGCCCCGAGTTCGCCGCTGACTGTGGTCACCAACCCGAAAGACCCGCGCCAGCCAGTGCCGGCCAGCGACGGCGCCGACTACCTGAAG  >  NC_002947/5503000‑5503296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`