| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 459,904 | A→C | 5.0% | intergenic (‑50/+29) | pqqB ← / ← pqqA | coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 459,904 | 0 | A | C | 5.0% | 314.7 / 6.4 | 100 | intergenic (‑50/+29) | pqqB/pqqA | coenzyme PQQ synthesis protein B/coenzyme PQQ synthesis protein A |
| Reads supporting (aligned to +/- strand): ref base A (42/53); new base C (3/2); total (45/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.38e-01 | |||||||||||
Only 100 of 101 total aligned reads displayed.
TCAGGGTGCCATCACGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGCTA > NC_002947/459758‑460044 | tCAGGGTGCCATCACGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCa < 4:403975/147‑1 (MQ=255) gggTGCCATCACGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGcc > 4:426338/1‑148 (MQ=255) ggTGCCATCACGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCTGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCATATACCGGATCGAATAAAC‑‑‑GAAAACGCCCCGGCAGGca > 6:389943/1‑146 (MQ=255) ccATCACGGTAGCCCTTGCAGTCGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCg > 7:66358/1‑149 (MQ=255) cATCACGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGt < 6:263582/149‑1 (MQ=255) aCGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCTCGGCCTGCCGGGGCGttttc < 1:144018/149‑5 (MQ=255) aCGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGaaa > 7:255811/1‑149 (MQ=255) aCGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGaaa < 6:443706/149‑1 (MQ=255) cGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAAc < 1:134376/149‑1 (MQ=255) gTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCTCGGCCTGCCGGGGCGttttcgtt < 2:140727/149‑8 (MQ=255) gCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTaa < 1:319488/149‑1 (MQ=255) gCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTaa < 4:41110/149‑1 (MQ=255) gCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTaa < 8:263717/149‑1 (MQ=255) ccTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGc > 5:271060/1‑149 (MQ=255) ccTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGc > 4:249741/1‑149 (MQ=255) ccTTGCAGTTGACGCAGGTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGCATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGc < 5:389943/149‑1 (MQ=255) aGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCt < 6:114466/149‑1 (MQ=255) gACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAg < 5:318762/148‑1 (MQ=255) aCGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCg < 7:113019/149‑1 (MQ=255) aCGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCg < 3:143267/149‑1 (MQ=255) aCGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCg > 3:339921/1‑149 (MQ=255) aCGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCAGGCTTAgg < 6:436938/148‑2 (MQ=255) gcagttgcagttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAACTGGGGGAGAGCCCCGGCAGCCCGAGGCGAGAAACCCTAACCCTTGCTAAGc > 1:364312/1‑149 (MQ=255) gcagttgcagttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGt > 8:389896/1‑149 (MQ=255) cagttgcagttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGtt < 3:110952/149‑1 (MQ=255) agttgcagttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTa < 1:178738/149‑1 (MQ=255) ttgcagttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGc > 5:199321/1‑149 (MQ=255) gcagttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCg > 4:219275/1‑148 (MQ=255) gcagttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCg < 3:426338/148‑1 (MQ=255) gcagttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCg > 3:38052/1‑148 (MQ=255) cagttCCTCTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGaa < 8:168335/149‑1 (MQ=255) cagttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGaa < 4:44740/149‑1 (MQ=255) cagttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGACGACGCTTCAAACCCTAAGCCTGGCTTAGCGGTAAGCg > 1:329831/1‑147 (MQ=255) ttCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTa > 7:116405/1‑149 (MQ=255) aCTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTattgc > 7:147403/1‑145 (MQ=255) aCTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTCCATg < 3:249741/149‑1 (MQ=255) aCTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATg > 6:172967/1‑149 (MQ=255) aCTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATg > 5:166319/1‑149 (MQ=255) aCTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATg > 7:410198/1‑149 (MQ=255) aCTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATg > 1:297960/1‑149 (MQ=255) cTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATgg > 3:270132/1‑149 (MQ=255) cGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGTCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGt < 3:314271/147‑1 (MQ=255) gAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACtt > 3:262864/1‑149 (MQ=255) aaCCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCGCTCTCTATGCAGAAACCGGATCGAAAAACC‑‑‑CAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTc < 2:215573/149‑1 (MQ=255) cccGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGa < 8:410198/149‑1 (MQ=255) ccGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCg > 3:347039/1‑147 (MQ=255) gCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGc < 1:75936/149‑1 (MQ=255) cACCGGCGGCGGAGCCGAGAACCTGGATGTAGATGGCCACTCTCTATTCAGAAACCGGATCGAAAATAG‑‑‑TAAAACGCCCCGGCAGGGCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTTCATTGTGAGTTCGATGc < 2:78485/147‑1 (MQ=255) ggcggcggAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATAc > 1:300352/1‑149 (MQ=255) ggcggcggAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATAc < 6:199321/149‑1 (MQ=255) cggcggAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGc < 3:322760/149‑1 (MQ=255) ggcggAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACg > 8:281530/1‑147 (MQ=255) cggAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAgg > 1:206435/1‑149 (MQ=255) gCCGAGAACCTGGATGTACATGGCCACTCTCTATGCGGAAACCGGATCGAAAAAAC‑‑‑GAAAAAGCCCCCGCAGGCCGAGGCGTGAAACCCAAAGCCAGGCGTAGCGGTTTGCGAAGTAAATGGTGACTTCGAAGCCGATACGCAGGTCAg > 4:217186/1‑149 (MQ=255) gagaACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAgtg > 7:33970/1‑148 (MQ=255) agaACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACg > 7:202022/1‑137 (MQ=255) agaACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTa < 8:66358/149‑1 (MQ=255) agaACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTa < 2:206435/149‑1 (MQ=255) agaAACTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACg < 8:202022/137‑1 (MQ=255) gaACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTAt < 7:389896/149‑1 (MQ=255) tGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTg < 3:406414/149‑1 (MQ=255) tACATGGCCACTCTCTATGCGGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGt < 3:217186/149‑1 (MQ=255) tACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTgg < 4:347039/148‑1 (MQ=255) aCATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTc > 7:56882/1‑149 (MQ=255) cATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTc < 5:149947/148‑1 (MQ=255) ggCCACGCTCAATGCATAACCCGGACCGAAAAACC‑‑‑CAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCcaca < 2:216557/149‑1 (MQ=255) gcaaCTCTCTATGAATAAACCGGATCGCAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACAt < 6:233040/146‑1 (MQ=255) gCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTgg > 2:249472/1‑76 (MQ=255) gCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTgg < 1:249472/76‑1 (MQ=255) gCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCcaca < 1:388359/148‑1 (MQ=255) gCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCcaca < 8:116405/148‑1 (MQ=255) gCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCcaca < 4:38052/148‑1 (MQ=255) cACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAgt > 3:295066/1‑126 (MQ=255) cACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAgt < 4:295066/126‑1 (MQ=255) cACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATgg < 8:33970/149‑1 (MQ=255) cACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATg > 5:71745/1‑148 (MQ=255) aCTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCCGCACGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGAAGGTCAGTGTATTAAGTTTTCTTCCAAATgg > 6:102992/1‑148 (MQ=255) tctATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAAt < 8:56882/147‑1 (MQ=255) tATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACt < 3:219275/149‑1 (MQ=255) tGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTcc > 2:191799/1‑149 (MQ=255) cAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCtt > 7:68472/1‑149 (MQ=255) cAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCtt < 7:73043/149‑1 (MQ=255) aaaCCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTa < 2:191457/140‑1 (MQ=255) aaaCCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTa > 1:191457/1‑140 (MQ=255) ccGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAAt > 7:342070/1‑149 (MQ=255) aTCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAgg < 8:255811/149‑1 (MQ=255) gAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAgggtt < 2:297960/149‑1 (MQ=255) gAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAgggtt < 6:71745/149‑1 (MQ=255) aaaaaaC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAgggttg > 7:411681/1‑149 (MQ=255) aaaaaaC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAgggttg > 8:307159/1‑149 (MQ=255) aaaaaC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAgggttgg < 7:281530/149‑1 (MQ=255) aaaac‑‑‑gaacacgCACAGTCAGTCCGATGCGTGAAACACTAAGCCTGGATTAGCTGTTAGAGAAGTACATGTTGACTTCGAAGCCGATACGCAGTTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAgtgttggg < 8:342070/149‑1 (MQ=255) aaaac‑‑‑gaaaacgCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAgggttggg < 4:339921/149‑1 (MQ=255) aac‑‑‑gaaaacgCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAgggttgggtt < 5:172967/149‑1 (MQ=255) gaaaaagCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGgttgtt > 1:87128/1‑149 (MQ=255) acgCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGc < 4:270132/149‑1 (MQ=255) cgCCTCGGCCTGCCGGGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGc > 2:135125/1‑148 (MQ=255) gCCTCGGCCTGCCGGGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGcta > 4:60406/1‑149 (MQ=255) gCCTCGGCCTGCCGGGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGcta > 8:32756/1‑149 (MQ=255) gCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGcta > 7:18295/1‑149 (MQ=255) | TCAGGGTGCCATCACGGTAGCCCTTGCAGTTGACGCAGTTGCAGTTCCACTGCGGGAACCCGCCACCGGCGGCGGAGCCGAGAACCTGGATGTACATGGCCACTCTCTATGCAGAAACCGGATCGAAAAAAC‑‑‑GAAAACGCCCCGGCAGGCCGAGGCGTGAAACCCTAAGCCTGGCTTAGCGGTTAGCGAAGTACATGGTGACTTCGAAGCCGATACGCAGGTCAGTGTATGCAGGTTTGGTCCACATGGAATTACTCCTTCCGAATGAGGGTTGGGTTGTTCAGCTA > NC_002947/459758‑460044 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |