| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,531,696 | G→T | 6.0% | L193M (CTG→ATG) | braE ← | high‑affinity branched‑chain amino acid ABC transporter permease BraE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,531,696 | 0 | G | T | 6.0% | 314.4 / 4.4 | 96 | L193M (CTG→ATG) | braE | high‑affinity branched‑chain amino acid ABC transporter permease BraE |
| Reads supporting (aligned to +/- strand): ref base G (48/42); new base T (2/4); total (50/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAGGTGCCGGCATGCCGTTGGGGCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAGGCCGACCACGATGTTCAGG > NC_002947/5531549‑5531844 | aaGGTGCCGGCATGCCGTTGGGGCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAgc > 3:359718/1‑149 (MQ=255) tGCCGGCATGCCGTTGGGGCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGcgccg > 7:35696/1‑149 (MQ=255) cGGCATGCCGTTGGGGCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAg > 5:237636/1‑149 (MQ=255) cGGCATGCCGTTGGGGCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACAACGGGAAGCCGAGGATGCCCCCCGCCATCGCCGCAg > 6:233075/1‑149 (MQ=255) aTGCCGTTGGGGCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGAt < 3:425572/149‑1 (MQ=255) gCCGTTGGGGCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATgg > 7:264494/1‑149 (MQ=255) ccGTTGGGGCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGgc > 2:229726/1‑149 (MQ=255) ccGTTGGGGCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGgc > 4:119167/1‑149 (MQ=255) ccGTTGGGGCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCAAAAGCCCAGCGTCACGATAGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGgc > 2:311697/1‑149 (MQ=255) cGTTGGGGCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGgcc < 1:229726/149‑1 (MQ=255) gTTGGGGCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCATCGCTGCGGCGCTGgcgg < 8:271533/149‑3 (MQ=255) ttGGGGCGACCGGTGAACGATAGCCAGTTGTTCAGCACCTGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGGAACACCGGGAAGCCGAGGATGCACCCCGCCATCGCTGCGGCGCTGgcggg < 4:110156/149‑4 (MQ=38) ggCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGc > 1:158688/1‑149 (MQ=255) gCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCg < 8:233727/149‑1 (MQ=255) gCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCg < 8:264494/149‑1 (MQ=255) ccACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCATCGCTGCGGCGCTgg > 4:156936/1‑139 (MQ=255) ccACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCATCGCTGCGGCGCTgg < 3:156936/139‑1 (MQ=255) ccACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCgg < 2:158688/149‑1 (MQ=255) ccACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCgg > 7:99429/1‑149 (MQ=255) ccACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCACCGCAGCGATGGCCGCCAGCgg > 1:162539/1‑149 (MQ=255) cACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGgccgcctggc > 3:91969/1‑143 (MQ=255) cACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCgg > 5:193428/1‑148 (MQ=255) aCCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCgg > 5:392954/1‑147 (MQ=255) ccGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGgcag > 2:409524/1‑149 (MQ=255) gTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCAc > 2:191389/1‑149 (MQ=255) tGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACg > 4:354613/1‑149 (MQ=255) aaCGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCt > 4:46727/1‑149 (MQ=255) aCGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTc < 7:96191/149‑1 (MQ=255) aCGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTc < 5:286890/149‑1 (MQ=255) ccAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAagc > 8:183785/1‑149 (MQ=255) ccAGTTGTTCAGCACCAGGCGAATGATCTAGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCCAGCTCCAGAagc > 6:238935/1‑149 (MQ=255) cAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAagcc < 5:64257/149‑1 (MQ=255) aGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAagcc > 7:248446/1‑148 (MQ=255) gttCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAagcccagcc > 1:94411/1‑149 (MQ=255) gttCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAagcccagc < 3:119167/148‑1 (MQ=255) cAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATAGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGcccc < 4:359718/148‑1 (MQ=255) aGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCa < 1:409524/148‑1 (MQ=255) aGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAg < 3:46727/149‑1 (MQ=255) cACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCAAGCCCCAgg > 6:51118/1‑148 (MQ=255) cAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACt < 6:167160/149‑1 (MQ=255) aGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTg < 1:175449/149‑1 (MQ=255) aGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTg < 8:35696/149‑1 (MQ=255) aGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTg < 1:433561/149‑1 (MQ=255) aGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTg < 3:354613/149‑1 (MQ=255) cGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGt > 5:66937/1‑148 (MQ=255) aaTGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAAc < 1:13537/149‑1 (MQ=255) tcGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAgcgc > 4:214697/1‑149 (MQ=255) tcGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAgcgc > 2:297100/1‑149 (MQ=255) gCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGTACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAgc < 2:196969/145‑1 (MQ=255) gCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAgcg < 8:248446/146‑1 (MQ=255) gCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑Ca < 7:183785/149‑1 (MQ=255) cAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTcc > 6:311683/1‑111 (MQ=255) cAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTcc < 5:311683/111‑1 (MQ=255) cAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAgg > 5:14246/1‑149 (MQ=255) aaGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGcc < 6:66937/149‑1 (MQ=255) aaGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCACCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGcc < 2:162539/149‑1 (MQ=255) gCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGt < 5:233075/149‑1 (MQ=255) tCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCAcc > 7:300924/1‑148 (MQ=255) aCGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGAt > 3:65556/1‑149 (MQ=255) aCGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGAt > 3:356247/1‑149 (MQ=255) aCGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGAt < 1:191389/149‑1 (MQ=255) gATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATgg < 6:237636/149‑1 (MQ=255) ccAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCa > 6:11919/1‑146 (MQ=255) ggTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAAc < 1:311697/149‑1 (MQ=255) aGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCa > 5:130629/1‑114 (MQ=255) aGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCa < 6:130629/114‑1 (MQ=255) tCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCAc > 4:387082/1‑149 (MQ=255) cACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACg > 4:104532/1‑149 (MQ=255) aCCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACg > 5:253240/1‑148 (MQ=255) aCCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACg > 7:292836/1‑148 (MQ=255) cATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAAcc > 2:353394/1‑147 (MQ=255) cgcAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTc > 4:324670/1‑149 (MQ=255) cAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTc > 7:220957/1‑147 (MQ=255) cAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATACAACGCCACGTAACCCAGGTc > 5:38647/1‑147 (MQ=255) aaCACCGGGAAGGCGAGGATGCAACCCGCCAGCGCCGCAGCGATGGCCGCCAGGGGCAGCACGCTCCAGAAGCCAAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTATGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAg < 5:238935/149‑1 (MQ=255) acacCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCa > 6:88008/1‑132 (MQ=255) acacCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCa < 5:88008/132‑1 (MQ=255) cacCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAg > 5:361038/1‑147 (MQ=255) ccGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAgg < 8:346314/149‑1 (MQ=255) ggAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAggccg > 3:373004/1‑149 (MQ=255) ggAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAggccg < 3:324670/149‑1 (MQ=255) aaGCCGAGGATGCACCCCGCCATCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAggccggc < 5:51118/149‑1 (MQ=255) aGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAggccggc > 3:215475/1‑148 (MQ=255) cGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAgg > 4:268228/1‑149 (MQ=255) cGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAgg < 2:408154/149‑1 (MQ=255) gAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAGGc < 2:94411/149‑1 (MQ=255) gAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAGGc < 8:99429/149‑1 (MQ=255) gCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCGCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAGGCCGACCa < 8:72740/149‑1 (MQ=255) ccccGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAGGCCGACCACGa < 6:193428/149‑1 (MQ=255) cccGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAGGCCGACCACg > 7:187043/1‑147 (MQ=255) cccGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAGGCCGACCACg < 8:187043/147‑1 (MQ=255) cccGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAGGCCGACCACGAt > 6:205597/1‑149 (MQ=255) cccGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAGGCCGACCACGAt > 2:319024/1‑149 (MQ=255) cccGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAGGCCGACCACGAt > 4:210745/1‑149 (MQ=255) cGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAACCCCAGCCCCAGGTCCTGGTAACCCAGCCCTAATAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAGGCCGACCACGa < 1:353394/149‑1 (MQ=255) ccAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAGGCCGACCACGATGTTc < 2:97239/149‑1 (MQ=255) aGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCCGCGC‑‑‑CAGGCCGTACGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAGGCCGACCACGATGTTCAg < 2:50868/149‑1 (MQ=255) gcgcCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAGGCCGACCACGATGTTCAgg > 3:93432/1‑149 (MQ=255) | AAGGTGCCGGCATGCCGTTGGGGCCACCGGTGAACGATAGCCAGTTGTTCAGCACCAGGCGAATGATCTCGCCAAAGCCCAGCGTCACGATCGCCAGGTAGTCACCGTGCATGCGCAACACCGGGAAGCCGAGGATGCACCCCGCCAGCGCCGCAGCGATGGCCGCCAGCGGCAGCACGCTCCAGAAGCCCAGCCCCAGGTACTGGTAACCCAGCGC‑‑‑CAGGCCGTAGGCACCGATGGCATAGAACGCCACGTAACCCAGGTCGAGCAGGCCGGCCAGGCCGACCACGATGTTCAGG > NC_002947/5531549‑5531844 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |