| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,746,488 | G→C | 5.6% | intergenic (+35/+64) | PP_5042 → / ← PP_5043 | hypothetical protein/PhoPQ‑activated pathogenicity‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,746,488 | 0 | G | C | 5.6% | 293.2 / 5.9 | 90 | intergenic (+35/+64) | PP_5042/PP_5043 | hypothetical protein/PhoPQ‑activated pathogenicity‑like protein |
| Reads supporting (aligned to +/- strand): ref base G (41/44); new base C (2/3); total (43/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01 | |||||||||||
AAAAGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCTGACCGGG > NC_002947/5746340‑5746636 | aaaaGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGCGCGCCGCgcgg > 6:415577/1‑149 (MQ=255) aaaGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑GC‑CGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCgcggg < 5:96543/149‑1 (MQ=255) aGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCgcgggcg > 1:46693/1‑149 (MQ=255) gCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCgcgggcgg > 7:388906/1‑149 (MQ=255) gCCGGCTGTGCACAATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCgcgggcgg < 4:226520/149‑1 (MQ=255) gCTGTGCACCATTTATGACTAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCt < 2:431033/149‑1 (MQ=255) gCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTGGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCt < 1:294217/149‑1 (MQ=255) tgCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGGTGCTCAAGGCCACGACAGGGTTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCt < 1:142279/149‑1 (MQ=255) tgCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGAt > 7:182349/1‑149 (MQ=255) tgCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGAt > 2:289140/1‑149 (MQ=255) tgCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCCCGCGCGGCGCTCg < 7:340848/147‑1 (MQ=255) cACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTc > 4:306262/1‑149 (MQ=255) ccATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCtg > 6:199112/1‑149 (MQ=255) ccATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCtg > 6:202557/1‑149 (MQ=255) ccATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCtg > 2:77590/1‑149 (MQ=255) cATTTATGACAAGCGCCCGGATACCTGCCGCAACCGCCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCtgt > 3:212321/1‑149 (MQ=255) aCAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGc > 1:92117/1‑149 (MQ=255) aCAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGc > 2:61826/1‑149 (MQ=255) cAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGcc > 5:420942/1‑149 (MQ=255) cAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGcc > 4:45461/1‑149 (MQ=255) aaGCGCCCGGATACCTGCCGCAACCCCCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGcc > 4:276711/1‑148 (MQ=255) gcgcCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAg < 5:199112/149‑1 (MQ=255) cccGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGTGCTCGATTCTGTGGCGATGCCGAGCTg > 5:16594/1‑149 (MQ=255) ggATACCTGCCGCAACCACCCCACGG‑‑‑AC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGc < 4:124712/149‑1 (MQ=255) cTGCCGCAACCACCCCACGG‑‑‑TG‑GGGCCAGGGCGGGGTTTTTGCGCCTACAAGCCC‑ATGGTGGTGGGGGGTTGTTTCTTGCGCGGGGGCATAAATGGAGCGCCGCGGGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAg < 4:197011/149‑1 (MQ=255) cTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAg < 1:61826/149‑1 (MQ=255) tGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGc < 4:356652/142‑1 (MQ=255) tGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGc > 3:356652/1‑142 (MQ=255) tGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAg > 5:11438/1‑148 (MQ=255) tGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAg > 8:336711/1‑148 (MQ=255) ccGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCa < 1:289140/148‑1 (MQ=255) cGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTTAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACt < 2:46531/149‑1 (MQ=255) cGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACt < 8:388906/149‑1 (MQ=255) accaccCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAAc < 6:420942/149‑1 (MQ=255) caccCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAAccc < 2:92117/149‑1 (MQ=255) caccCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAAcc > 8:121059/1‑148 (MQ=255) cAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGc > 2:350894/1‑149 (MQ=255) aaGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTGGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCGCGATTCTGTGGCGATGACGAGCTGGGCATGAAGCACTGAACCCACCGCt > 6:348541/1‑149 (MQ=255) gg‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTcc < 3:279931/149‑1 (MQ=255) c‑GGGCCAGGGCGGGGGTTTTGGGCCTACAAGCCC‑ATGGGGGTGGGGGGTTTTGTCTTGGGCGGGGGCATAAATCGCGCGCCGGGGGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCAt < 6:11438/149‑1 (MQ=255) c‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCCAAAGGTGGTTGGGGGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGGGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCa > 1:286191/1‑149 (MQ=255) gggCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCCAGCTCGGCAtcgcc < 5:415104/127‑5 (MQ=255) gggCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCCAGCTCGGCAtcgcc > 6:415104/1‑123 (MQ=255) gCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCAGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCAttt > 5:40972/1‑148 (MQ=255) ccACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGcc < 1:280606/109‑1 (MQ=255) ccACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGcc > 2:280606/1‑109 (MQ=255) ccACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCAttt > 4:104643/1‑147 (MQ=255) ccACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTca > 4:145126/1‑149 (MQ=255) ggCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTcagc > 1:84637/1‑147 (MQ=255) ggggTATTGCGCCTAAAAGCCC‑ATGGTGGTGGGGGGTTTAGTCTTGCGCCGGGGAATAAATCGAGCGCCGCGGGGGGGGGGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCgg < 4:212321/149‑1 (MQ=255) ggTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCggg > 3:193967/1‑148 (MQ=255) aTTGCGCAAACATGCCC‑ATGGTGGTTGGGGGTTTATTCTTGCGCCGGGGCAAAAATCGAGCGCCGCGGGGGCGGGGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGaa < 4:206309/148‑1 (MQ=255) cgcCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTcc > 2:404819/1‑149 (MQ=255) ccTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCgg < 3:145126/149‑1 (MQ=255) cTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGc < 2:46693/149‑1 (MQ=255) tACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGc > 5:439366/1‑148 (MQ=255) aaGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAg > 5:146654/1‑148 (MQ=255) aaGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAg > 6:126679/1‑148 (MQ=255) aaGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGc < 3:104643/149‑1 (MQ=255) gCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAACCAc > 7:365867/1‑149 (MQ=255) ccc‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAcc > 8:309822/1‑149 (MQ=255) cc‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAccc < 1:77590/149‑1 (MQ=255) aaGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAccccc < 2:84637/149‑1 (MQ=255) aGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCAcccccc < 4:193967/149‑1 (MQ=255) tggtTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGa < 8:182349/149‑1 (MQ=255) gggCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCg < 7:336711/148‑1 (MQ=255) gCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGTGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtg < 6:16594/149‑1 (MQ=255) gCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCCCCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGC‑CCCCCCTGATCCGCtgg > 7:395017/1‑149 (MQ=255) gCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtg > 7:40520/1‑149 (MQ=255) gCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtg > 2:298213/1‑149 (MQ=255) cGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtgg < 3:306262/149‑1 (MQ=255) gTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggt < 5:126679/149‑1 (MQ=255) tctgTCTTGCGCCGGGCCATAAACGGCGGCCCGGGGGGGGGGGGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggtg < 3:226057/145‑1 (MQ=255) gAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggtgg < 1:350894/148‑1 (MQ=255) tCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCAGTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGc > 5:196540/1‑149 (MQ=255) gcgcCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATTCCGAGCTGGGCATGAAGCACTGAACCCCCCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTc < 5:348541/147‑1 (MQ=255) gcgcCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCa < 6:146654/148‑1 (MQ=255) cgcCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAg < 8:40520/148‑1 (MQ=255) ggggCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATaa < 3:166904/149‑1 (MQ=255) ggggCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATaa < 3:276711/149‑1 (MQ=255) ggCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTc > 5:148942/1‑105 (MQ=255) ggCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTc < 6:148942/105‑1 (MQ=255) ggCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGt < 6:439366/149‑1 (MQ=255) aaaTCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCg > 7:92598/1‑149 (MQ=255) aaTCGAGCGCCGCCCGCGCGGCGCTCGATTTTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCCCCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggt > 7:398882/1‑126 (MQ=255) aaTCGAGCGCCGCCCGCGCGGCGCTCGATTTTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCtggt < 8:398882/126‑1 (MQ=255) tCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGc > 8:238206/1‑148 (MQ=255) cGAGCGCCGAGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCa > 1:65683/1‑148 (MQ=255) gAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCaa < 8:92598/148‑1 (MQ=255) aGCGCCGCCCGCGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTcagccag > 8:17711/1‑83 (MQ=255) aGCGCCGCCCGCGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTcagccag < 7:17711/83‑1 (MQ=255) cgccgcGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACg < 1:404819/149‑1 (MQ=255) gccgcGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGc < 4:389857/149‑1 (MQ=255) gcgcgGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCTGa < 2:286191/149‑1 (MQ=255) cgcgGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCTGAc < 3:45461/149‑1 (MQ=255) ggcggcGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCTGACCggg > 4:209026/1‑149 (MQ=255) | AAAAGCCGGCTGTGCACCATTTATGACAAGCGCCCGGATACCTGCCGCAACCACCCCAAGG‑‑‑TC‑GGGCCACGGCCGGGGTATTGCGCCTACAAGCCC‑AAGGTGGTTGGGCGTTGAGTCTTGCGCCGGGGCATAAATCGAGCGCCGCGCGGGCGGCGCTCGATTCTGTGGCGATGCCGAGCTGGGCATGAAGCACTGAACCCACCGCTCCCATTTCAGCCAGCGGGGAAGCTCCGGCAAGCACCCCCCTGATCCGCTGGTGGATGCTCAGGATAAGTCTGCGGCAAAACGCTGACCGGG > NC_002947/5746340‑5746636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |