| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,753,485 | T→G | 7.4% | intergenic (+46/‑320) | glnA → / → glnL | glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,753,485 | 0 | T | G | 7.4% | 282.7 / 12.3 | 95 | intergenic (+46/‑320) | glnA/glnL | glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG |
| Reads supporting (aligned to +/- strand): ref base T (48/40); new base G (4/3); total (52/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.34e-01 | |||||||||||
Only 100 of 106 total aligned reads displayed.
CGACTTCATCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACTTTCT > NC_002947/5753340‑5753632 | cgacTTCATCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCgg < 1:144933/149‑1 (MQ=255)cgacTTCATCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCgg < 2:267789/149‑1 (MQ=255) acTTCATCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGa < 7:132100/149‑1 (MQ=255) cTTCATCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAg < 4:247355/149‑1 (MQ=255) ttCATCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAgg > 4:59109/1‑149 (MQ=255) aTCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCGAGGGAGGCCg < 6:270319/149‑1 (MQ=255) gATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACACGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCCCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGttt < 4:342974/149‑1 (MQ=255) aTGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGGGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGtgtt > 4:278887/1‑149 (MQ=255) aTGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCGAGGGAGGCCGtttt < 4:117139/149‑1 (MQ=255) aTGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGAACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGtttt < 5:155635/149‑1 (MQ=255) tGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGttttt < 5:54306/149‑1 (MQ=255) cTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGATGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGtt > 1:336166/1‑149 (MQ=255) ttCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGttt > 7:187064/1‑149 (MQ=255) tacATCGAGATGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGCAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGGCGTTTTTGtt > 2:363625/3‑148 (MQ=255) tCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTc > 2:238542/1‑149 (MQ=255) aaGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGttt > 7:289976/1‑137 (MQ=255) aaGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGttt < 8:289976/137‑1 (MQ=255) cGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAg > 4:283708/1‑147 (MQ=255) aagaaATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGcgcc > 5:246635/1‑149 (MQ=255) gaaATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGcgccgc < 4:129061/149‑1 (MQ=255) gaaATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGcgccgc < 3:289715/149‑1 (MQ=255) aaaTCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCt > 6:294811/1‑149 (MQ=255) aGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCg < 2:23328/149‑1 (MQ=255) tACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCa > 2:352835/1‑149 (MQ=255) aCCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTGTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTccc > 8:385695/1‑147 (MQ=255) acCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGctc > 2:353140/1‑148 (MQ=255) acCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGctc > 5:41146/1‑148 (MQ=255) cccGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTa < 1:409503/149‑1 (MQ=255) ccGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACATAGATAAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTa > 1:342543/1‑149 (MQ=255) ccGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑t > 7:230551/1‑149 (MQ=255) ggCTGTAATAAGATCTCTACTTCAGGTGCTGATCTGATTGGCGCGCATCGCCGATGACAT‑GATCATAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACGTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑Tc < 1:363625/148‑1 (MQ=255) gCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCt > 8:387656/1‑149 (MQ=255) gAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTg < 4:141739/147‑1 (MQ=255) gAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGt < 2:336166/149‑1 (MQ=255) gAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGt < 6:41146/149‑1 (MQ=255) gAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCATCGGGAGGCCGTTTTTGTTTC‑‑‑TCCGCACCTAGCAGAAGCGCCGCTGATTCGCCAGTCACGCTATGCTCTA‑TCTTGGt > 7:293581/1‑149 (MQ=255) aGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTaa < 8:187064/149‑1 (MQ=255) aGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTaa < 8:230551/149‑1 (MQ=255) gCTGTACTAGAGCTGCTGATCTGATTTGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGTCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAAt < 6:249493/149‑1 (MQ=255) gCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAAt > 7:154651/1‑149 (MQ=255) gTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTca > 8:150824/1‑149 (MQ=255) gTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTca > 5:128048/1‑149 (MQ=255) ctacAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCacac > 2:100395/1‑149 (MQ=255) cAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTc < 2:184524/112‑1 (MQ=255) cAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTc > 1:184524/1‑112 (MQ=255) gctgctGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGc < 3:283708/149‑1 (MQ=255) ctgctgATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGcc < 8:154651/149‑1 (MQ=255) tgctgATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGccc > 5:442143/1‑149 (MQ=255) tgctgATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGcc > 6:280555/1‑148 (MQ=255) gatctgatTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCaa > 5:301617/1‑149 (MQ=255) gatTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCt > 1:211256/1‑149 (MQ=255) gatTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCt > 7:371127/1‑149 (MQ=255) atTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTg < 7:150824/146‑1 (MQ=255) agtGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTc < 6:115826/147‑1 (MQ=255) cgcCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACACTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCa > 2:192298/1‑148 (MQ=255) gcCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGAAGAAGCGCCGCTGATTCGCCTGTAACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGATCGCCaa > 5:110458/1‑148 (MQ=255) gcCTCGCGACGATGACAT‑GATCAAAACCGCCTCCATCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCATCTGATTCGACTGTCACGCTATGCTCTA‑TCTTGGTGCATTAAATAACACCAAGCCCTCAATTGCTCCCaaa > 2:364040/1‑148 (MQ=255) cTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTg < 1:72635/65‑1 (MQ=255) cTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTg > 2:72635/1‑65 (MQ=255) tCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTg > 2:231374/1‑149 (MQ=255) tCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTg > 8:28771/1‑149 (MQ=255) gcgcCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTgg < 6:442143/148‑1 (MQ=255) actaTGAAAT‑GATCAAAACGGCCTCCCTGGTGAGGGCTTTTTTCTCCCCCTTGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGt < 1:364040/146‑1 (MQ=255) cGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAg < 6:301617/149‑1 (MQ=255) cGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAg < 7:28771/149‑1 (MQ=255) cGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAg < 7:387656/149‑1 (MQ=255) cGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAg > 6:2210/1‑149 (MQ=255) gATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAgg < 2:342543/149‑1 (MQ=255) gATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAgg < 1:100395/149‑1 (MQ=255) aTGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGt > 5:422370/1‑149 (MQ=255) cAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTgg > 2:416196/1‑138 (MQ=255) cAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTgg < 1:416196/138‑1 (MQ=255) acaaaaaCGGCCTCCCGAGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCt > 6:322622/4‑132 (MQ=255) acaaaaaCGGCCTCCCGAGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCt < 5:322622/129‑1 (MQ=255) aTCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGtt > 8:25605/1‑149 (MQ=255) aTCAAAACGGACTCCCTCGGGATGCCGTTTTTGTTTC‑‑‑TGGTCACCTTTCAGAAGCGCCGCTGATTCGCCTGTCACGCTTTGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGTTTAAACGt < 8:293581/148‑1 (MQ=255) caaaaaCGGCCTCCCGAGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGttt > 8:94600/3‑149 (MQ=255) cAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTTTGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGttt < 1:352835/148‑1 (MQ=255) aaaaaCGGCCTCCCGAGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTc > 7:218584/2‑149 (MQ=255) aaaCGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCAc < 1:156743/149‑1 (MQ=255) aaaCGGCCTCCCTCGGGAGGCCGTTTTTCTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCAc > 1:248135/1‑149 (MQ=255) aaCGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCa < 2:175971/147‑1 (MQ=255) aaCGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCa > 1:175971/1‑147 (MQ=255) aaCGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCAc > 6:33863/1‑148 (MQ=255) aaCGGCCTCCCGAGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCAc > 8:100778/1‑148 (MQ=255) aaCGGCCTACCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGATGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCAc > 8:357686/1‑148 (MQ=255) aCGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCAcc > 7:231801/1‑148 (MQ=255) cGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCaa < 6:422370/149‑1 (MQ=255) gggctcccttGGGTTGTCGTTTTTTTTTT‑‑‑TTCGCAACTTTCATAATCGGCGCTTTTTTGTCTGTTACGGTATTCTTTATTGTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCaa < 1:353140/146‑1 (MQ=255) gCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGa > 7:239431/1‑149 (MQ=255) ctccctcGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACt > 3:112549/1‑149 (MQ=255) ctccctcGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACt > 7:161292/1‑149 (MQ=255) ctccctcGGGAGGCCGTTTTTGTTTC‑‑‑TGCCCACCTTGGAGAAGCGCCGCTGATTCGCCTGTCACGCTATGGTCTA‑TCTTTGTGCATTATTTAACACCCTGCCCTCAATTGCTCCCCAATCTTGGGCAGGTTTAACGTTTGCCCCAGAca > 6:303529/1‑148 (MQ=255) cctcGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACttt < 5:33863/148‑1 (MQ=255) cctcGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACTTTc < 5:2210/149‑1 (MQ=255) cctcGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACTTTc < 5:280555/149‑1 (MQ=255) cctcGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACTTTc < 8:327489/149‑1 (MQ=255) ctcGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACTTTCt > 7:154276/1‑149 (MQ=255) ctcGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACTTTCt > 7:160195/1‑149 (MQ=255) tcGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACTTTCt > 2:59526/1‑148 (MQ=255) | CGACTTCATCGATGCCTTCATCGAGCTGAAGAGCGAAGAAGAAATCAAGGTCCGTACCTTCGTACACCCGCTGGAATACGAGCTGTACTACAGCTGCTGATCTGATTGGCGCCTCGCGCCGATGACAT‑GATCAAAACGGCCTCCCTCGGGAGGCCGTTTTTGTTTC‑‑‑TGCGCACCTTGCAGAAGCGCCGCTGATTCGCCTGTCACGCTATGCTCTA‑TCTTGGTGCATTAATTCACACCATGCCCTCAATTGCTCCCCAATCTGGTTCAGGTTAAACGTTTCACCAAGACTTTCT > NC_002947/5753340‑5753632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |