| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,763,964 | G→C | 6.8% | intergenic (+23/‑56) | PP_5057 → / → ctpA | M23/M37 family peptidase/carboxy‑terminal‑processing protease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,763,964 | 0 | G | C | 6.8% | 332.6 / 10.6 | 103 | intergenic (+23/‑56) | PP_5057/ctpA | M23/M37 family peptidase/carboxy‑terminal‑processing protease |
| Reads supporting (aligned to +/- strand): ref base G (47/49); new base C (3/4); total (50/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.48e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
CGTCAAGGCCGGTGAAGCCATTTCCACCGTTGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTGGCCACCGCCGCAGAGCCGGCCAAGGCC > NC_002947/5763818‑5764112 | cGTCAAGGCCGGTGAAGCCATTTCCACCGTTGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAg > 7:139664/1‑149 (MQ=255) gggaaGGCCGTTGAAGCCATTTCCACCGTTGGCGTCAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTTTCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCTGGGCTAGTCAAATTTGTACGGCGCAGC‑CTGAg < 6:130716/145‑1 (MQ=255) gTCAAGGCCGGTGAAGCCATTTCCACCGTTGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAg < 7:19915/148‑1 (MQ=255) gTCAAGGCCGGTGAAGCCATTTCCACCGTTGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGt > 8:65883/1‑149 (MQ=255) aGGCCGGTGAAGCCATTTCCACCGTTGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGtgctg < 8:177428/149‑1 (MQ=255) ggCCGGTGAAGCGATTTGCAGCGTTGGCGAGAGCGGTGGTCAGGTCGCGGCAGGCTTGTATTTCGCTATCCGCGAGGAGGGCCGGCCTAGCGACCTTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGtgctgc < 5:109663/149‑1 (MQ=255) gCCGGTGAAGCCATTTCCACCGTTGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTgcg > 5:189234/1‑149 (MQ=255) tGAAGCCATTTCCACCGTTGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGCACTCAG‑GCTGCGCCgta < 1:403980/149‑3 (MQ=255) tGAAGCCATTTCCACCGTTGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGAt > 5:9544/1‑149 (MQ=255) aGCCATTTCCACCGTTGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTTCCGGGGCTAGTCAAATTTCTACGGCGCAGCACTCAG‑GCTGCGCCgtagaa < 3:331351/149‑6 (MQ=255) gCCATTTCCACCGTTGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTATACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTc > 2:322638/1‑149 (MQ=255) cATTTCCACCGTTGGCGACAGCCGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTccc > 5:322688/1‑149 (MQ=255) ccACCGTTGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGCACTCAG‑GCTGCGCCgt < 8:14099/137‑2 (MQ=255) ccACCGTTGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGCACTCAG‑GCTGCGCCgt > 7:14099/1‑136 (MQ=255) ccACCGTTGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGGGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAgg < 6:297749/148‑1 (MQ=255) cACCGTTGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGa < 7:65883/149‑1 (MQ=255) cACCGTTGGCGACAGCGGGGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAggg < 5:358518/148‑1 (MQ=255) tGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCt > 4:379998/1‑148 (MQ=255) gCGACAGCGGTGGTCAGTACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAATTTTCTAGGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCGGGGAgcatcgg < 1:322638/148‑6 (MQ=255) cGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTa > 5:178081/1‑147 (MQ=255) cGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACa < 2:321244/149‑1 (MQ=255) gACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATg < 4:271666/128‑1 (MQ=255) gACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATg > 3:271666/1‑128 (MQ=255) aCAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAg > 7:120105/1‑148 (MQ=255) cGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGAt > 5:96117/1‑147 (MQ=255) ggtggtCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGAAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAg < 8:139664/149‑1 (MQ=255) gtggtCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAg > 5:329663/1‑148 (MQ=255) gtCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAgt > 6:221346/1‑149 (MQ=255) gtCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAgt < 3:55614/149‑1 (MQ=255) cAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGCACTCAG‑GCTGCGcc < 3:398634/112‑1 (MQ=255) cAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGCACTCAG‑GCTGCGcc > 4:398634/1‑112 (MQ=255) gACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTAGAGGATCAGGAgttcgtt < 7:70381/149‑1 (MQ=255) aCGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAgttcgttc < 6:96117/149‑1 (MQ=255) aCGCGGCAGGCTTGAATTTCGCTATCCGCCAGCACGGCCTGCCTACCTACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAgttcgttc < 6:439149/149‑1 (MQ=255) cgcgGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAgttcgttc < 4:25364/148‑1 (MQ=255) ggCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGAGCAGGAGTTCGTTCGACa > 4:105134/1‑149 (MQ=255) gCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACAt > 2:435300/1‑149 (MQ=255) gCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAAATTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACAt < 5:134238/149‑1 (MQ=255) aGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACAtgc < 7:96223/149‑1 (MQ=255) cTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACAtgctgc < 6:322688/149‑1 (MQ=255) cTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACAtgctg > 1:117730/1‑148 (MQ=255) gTATTTCGCTATCCGCCAGCAGGGCCGTCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGGGCTTACAGGATc < 6:221746/124‑1 (MQ=255) gTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATc > 5:221746/1‑124 (MQ=255) gTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACt > 6:305973/1‑149 (MQ=255) ttCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAgttcgtt > 6:266959/1‑131 (MQ=255) ttCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAgttcgtt < 5:266959/131‑1 (MQ=255) tCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGcc < 2:266290/148‑1 (MQ=255) cGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTc > 4:208885/1‑149 (MQ=255) tCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGtct < 8:120105/148‑1 (MQ=255) gCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAg > 6:422432/1‑93 (MQ=255) gCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAg < 5:422432/93‑1 (MQ=255) cagcagGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATGAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCa > 5:370504/1‑149 (MQ=255) agcagGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGCGTGCTGCGCCGCTGCTCCCCAGGGAGCGCGTACAGGATCAGGAGGTCCTTCGACATGCTGCCCTCGCCTCGTCTCAccccg > 7:407089/1‑147 (MQ=255) gcagGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGc > 7:127559/1‑149 (MQ=255) agGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTg < 5:221346/149‑1 (MQ=255) gggCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTgg < 1:50614/149‑1 (MQ=255) ggccggccTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTgcgc > 7:78088/1‑72 (MQ=255) ggccggccTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGc < 8:127559/149‑1 (MQ=255) gccggccTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGcc > 5:79584/1‑149 (MQ=255) gccggccTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGcc < 2:117730/149‑1 (MQ=255) gccTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGt < 5:421409/149‑1 (MQ=255) ccTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTc > 4:202294/1‑149 (MQ=255) ccGACCCTTCGCAGTGGTGCCGTGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCa < 3:71471/147‑1 (MQ=255) ccGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATc < 6:189234/149‑1 (MQ=255) ccGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATc > 1:114477/1‑149 (MQ=255) cGAGCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGTAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATc < 7:287021/148‑1 (MQ=255) cGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCg < 3:202294/149‑1 (MQ=255) gACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGc > 4:240406/1‑149 (MQ=255) ccTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAg < 7:348668/89‑1 (MQ=255) ccTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAg > 8:348668/1‑89 (MQ=255) ccTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCt > 3:99964/1‑149 (MQ=255) cTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCTTg > 6:126058/1‑149 (MQ=255) cTTCGCAGTGGTGCCGGGGCGAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGCCATGCTGCACTCGCCTCGTCTCAccc > 8:106544/1‑126 (MQ=255) cGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTgg < 5:305973/147‑1 (MQ=255) cGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGc < 1:435300/148‑1 (MQ=255) gCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCgg > 3:169091/1‑149 (MQ=255) ccGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGTAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGgcgcgc < 2:347610/149‑1 (MQ=255) gggCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGcccc > 4:345451/1‑149 (MQ=255) ggCTAGTCAACTTTCTACGGCTCAGC‑CTGATTGCTGCTGCGATGCTCCCCTGGGAGCGCTTACAGGATGAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCt < 8:407089/149‑1 (MQ=255) cTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTgg < 4:99964/149‑1 (MQ=255) cTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTgg < 6:178081/149‑1 (MQ=255) tAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTGGc > 2:378171/1‑149 (MQ=255) gTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTGGCCa > 7:30853/1‑149 (MQ=255) tCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTccc > 2:311738/1‑43 (MQ=255) tCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTccc < 1:311738/43‑1 (MQ=255) tCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTGGCCAc > 3:217863/1‑149 (MQ=255) aaaTTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCt < 2:234911/111‑1 (MQ=255) aaaTTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCt > 1:234911/1‑111 (MQ=255) aaaTTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTGGCCAccg > 2:263197/1‑149 (MQ=255) aaTTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTGGCCAccgc < 3:208885/149‑1 (MQ=255) aaTTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTGGCCAccgc > 5:90527/1‑149 (MQ=255) tttCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTGGCCAccgccg > 4:380793/1‑149 (MQ=255) cGGCGCAGCACTCAG‑GCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTGGCCACCGCCGCAGAGc > 2:382930/1‑149 (MQ=255) ggCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTGGCCACCGCCGCAGAGcc < 6:9544/149‑1 (MQ=255) ggCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTAC‑‑GATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTGGCCACCGCCGCAGAGCCgg < 3:379998/149‑1 (MQ=255) cAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTGGCCACCGCCGCAGAGCCGGcc < 3:105134/149‑1 (MQ=255) c‑cTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGTATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCTCCCTGGCGGTCGGCGCGCCCCTGGCACCCGCCGCAGAGCCGGCCAAg > 7:250829/1‑149 (MQ=255) c‑cTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTGGCCACCGCCGCAGAGCCGGCCAAg > 5:384270/1‑149 (MQ=255) tGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTg < 3:340114/123‑1 (MQ=255) tGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTg > 4:340114/1‑123 (MQ=255) | CGTCAAGGCCGGTGAAGCCATTTCCACCGTTGGCGACAGCGGTGGTCAGGACGCGGCAGGCTTGTATTTCGCTATCCGCCAGCAGGGCCGGCCTACCGACCCTTCGCAGTGGTGCCGGGGCTAGTCAAATTTCTACGGCGCAGC‑CTGAGTGCTGCGCCGATGCTCCCCAGGGAGCGCTTACAGGATCAGGAGTTCGTTCGACATGCTGCACTCGCCTCGTCTCACCCAGCTGGCCCTGTCCATCGCCCTGGCGGTCGGCGCGCCCCTGGCCACCGCCGCAGAGCCGGCCAAGGCC > NC_002947/5763818‑5764112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |