| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,798,198 | T→C | 6.7% | intergenic (‑299/+75) | gltB ← / ← PP_5077 | L‑glutamate synthase subunit alpha/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,798,198 | 0 | T | C | 6.7% | 297.6 / 8.5 | 105 | intergenic (‑299/+75) | gltB/PP_5077 | L‑glutamate synthase subunit alpha/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (48/49); new base C (2/5); total (50/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.80e-01 | |||||||||||
Only 100 of 106 total aligned reads displayed.
TCTCGCCATTGAAAATTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCT > NC_002947/5798051‑5798343 | tcGCCATTGAAAATTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCgg > 1:274214/1‑149 (MQ=255) cGCCATTGAAAATTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCggg > 4:237943/1‑149 (MQ=255) gCCATTGAAAATTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTTATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCggg < 8:173466/148‑1 (MQ=255) gCCATTGAAAATTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCTGCGCCCga < 3:383065/147‑2 (MQ=255) aTTGAAAATTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCACACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCTGCGCCCGAgcgc < 1:337276/149‑1 (MQ=255) aTTGAAAATTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCgca < 8:116621/149‑1 (MQ=255) aaaaTTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGGA‑ACTAAGGGCTTGTGGCCGGCAGTCCGGGGACAGAAAAGCCTGCCGCGCTCGGGCgcagc < 1:40715/148‑1 (MQ=255) aaaaTTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCTGCGCCCGAGCGcggcag < 2:342423/149‑1 (MQ=255) aaaaTTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGcagcag < 6:350005/149‑1 (MQ=255) aaaaTTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGcagcag > 6:383276/1‑149 (MQ=255) aaaTTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCTGCGCCCGAGCGCGGCAgg < 6:179095/149‑1 (MQ=255) aaaTTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAgg > 8:215606/1‑149 (MQ=255) aaTTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGc > 5:48490/1‑149 (MQ=255) tATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGt > 3:5068/1‑149 (MQ=255) aTGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTGGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCTGCGCCCGAGCGCGGCAGGCtttt < 5:261275/148‑4 (MQ=255) gTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCg > 2:339597/1‑148 (MQ=255) tCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGa > 6:295194/1‑148 (MQ=255) cGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGa > 4:424704/1‑147 (MQ=255) gCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAg > 6:44486/1‑149 (MQ=255) gCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAg > 4:82086/1‑149 (MQ=255) cAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGc > 3:402875/1‑149 (MQ=255) aTTTTGAATGTTTTTGCGCGATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTa < 6:104296/149‑1 (MQ=255) aTTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTa < 4:274275/149‑1 (MQ=255) aTTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTa < 7:352613/149‑1 (MQ=255) ttttGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAg < 6:233340/149‑1 (MQ=255) gTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCt > 6:105696/1‑149 (MQ=255) tttttGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCtt < 4:194511/149‑1 (MQ=255) tttGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTa < 6:48490/148‑1 (MQ=255) ttGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAg < 7:9348/148‑1 (MQ=255) ttGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAg < 5:295194/148‑1 (MQ=255) gcgcCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTa > 2:191973/1‑149 (MQ=255) ccATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAg < 7:300117/132‑1 (MQ=255) ccATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAg > 8:300117/1‑132 (MQ=255) ccATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTg < 8:116263/149‑1 (MQ=255) ccATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTg < 2:274214/149‑1 (MQ=255) ccATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTg < 3:99925/149‑1 (MQ=255) cATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCgcagca > 5:76834/1‑114 (MQ=255) cATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCgcagca < 6:76834/114‑1 (MQ=255) cATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTgg > 1:70651/1‑149 (MQ=255) cATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTgg < 1:339597/149‑1 (MQ=255) cATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTgg > 7:355102/1‑149 (MQ=255) aTGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTggg > 6:33492/1‑149 (MQ=255) gcCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGggcggc > 8:171876/1‑149 (MQ=255) gcCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCAGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTGGCTTAGCTACTGggcggc > 4:274601/1‑149 (MQ=255) cGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGcggcgg < 2:70651/149‑1 (MQ=255) gTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCggg < 4:293154/149‑1 (MQ=255) ggCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATgcc > 4:397226/1‑149 (MQ=255) gCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCgg < 3:237943/149‑1 (MQ=255) gCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCg < 5:105696/148‑1 (MQ=255) cTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGccc > 8:361508/1‑146 (MQ=255) cTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCgg > 7:170504/1‑148 (MQ=255) tCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCgg > 7:404067/1‑147 (MQ=255) tCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGaa < 5:383276/149‑1 (MQ=255) gAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGaa < 5:44486/147‑1 (MQ=255) gAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAg < 4:5068/148‑1 (MQ=255) ggcTGAAGCGGTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTa < 8:326874/147‑1 (MQ=255) tGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTa > 6:316548/1‑99 (MQ=255) tGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTa < 5:316548/99‑1 (MQ=255) tGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTAt > 3:182362/1‑147 (MQ=255) gAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCa < 4:182362/148‑1 (MQ=255) gAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAg > 1:356069/1‑149 (MQ=255) aaGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGc > 3:22907/1‑149 (MQ=255) gCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCgg < 3:37717/149‑1 (MQ=255) gCGTTTCAGCCATGACTGCA‑ACTAAGGGCATGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCgg > 1:255104/1‑149 (MQ=255) tttCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGcc > 5:234131/1‑149 (MQ=255) tttCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGcc < 4:202408/149‑1 (MQ=255) tCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑Gt > 8:380583/1‑149 (MQ=255) ccATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGcc < 6:146054/149‑1 (MQ=255) cATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGc > 7:264979/1‑147 (MQ=255) tGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGc > 2:83307/1‑149 (MQ=255) tGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCtt > 4:47756/1‑149 (MQ=255) cA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCtt < 8:355102/147‑1 (MQ=255) a‑aCTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCttgtt < 2:356069/149‑1 (MQ=255) aCTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCttgttg < 6:353816/149‑1 (MQ=255) cTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGc < 5:27238/140‑1 (MQ=255) tAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCGCGGAAGGTATCAGCGGGCC‑GTGGcc > 2:331860/1‑136 (MQ=255) tAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTCAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGcc < 1:331860/136‑1 (MQ=255) aGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGAc < 8:170504/148‑1 (MQ=255) aGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACg < 7:171876/149‑1 (MQ=255) gggCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACg > 4:412538/1‑148 (MQ=255) gCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCttgt < 4:130366/140‑1 (MQ=255) gCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCttgt > 3:130366/1‑140 (MQ=255) cTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGc < 6:234131/149‑1 (MQ=255) gCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACgg > 3:227975/1‑149 (MQ=255) gCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGCGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCA‑GTGGCCAGCTCTTGTTGGACGCTGCCGAccg > 8:192533/1‑147 (MQ=255) aGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTg < 7:215606/149‑1 (MQ=255) ggACATAAAAGCCTGCCGCGCGCGGGCGCAGCAGGCTATTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTTATGCCGCCCGGAAGGTATCAGCGGGCCAGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCaa < 1:83307/149‑1 (MQ=255) gACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAgg < 3:47756/149‑1 (MQ=255) aCAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGt < 3:412538/149‑1 (MQ=255) aaaaGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTAc > 1:249433/1‑149 (MQ=255) aaaaGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTAc > 3:426911/1‑149 (MQ=255) aaaaGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTAc > 4:151921/1‑149 (MQ=255) aaaaGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTAc > 5:312509/1‑149 (MQ=255) aaGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCa < 8:404067/149‑1 (MQ=255) gCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGc > 2:426946/1‑149 (MQ=255) ccTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGcc > 1:327996/1‑149 (MQ=255) ctgctgCGCCCGAGCGCGGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACACTGCCGACGGTACGTGGCCAAGGTTTACCAGCCt > 8:262214/1‑149 (MQ=255) cTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCt < 2:255104/149‑1 (MQ=255) tgctgcGCCCGAGCGCGGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTg > 7:180415/1‑149 (MQ=255) cgcTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCt < 3:274601/149‑1 (MQ=255) | TCTCGCCATTGAAAATTTATGTCGCAATTTTGAATGTTTTTGCGCCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCA‑ACTAAGGGCTTGTGGCCGGCAGTCC‑GGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCC‑GTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCT > NC_002947/5798051‑5798343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |