Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,807,985 T→C 21.7% intergenic (+120/+35) mrcA → / ← maeB penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,807,9850TC21.7% 54.6 / 12.3 33intergenic (+120/+35)mrcA/maeBpenicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
Reads supporting (aligned to +/- strand):  ref base T (12/13);  new base C (3/4);  total (16/17)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.97e-01

GACGCCGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGCCCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCATCGGAAAC  >  NC_002947/5807844‑5808124
                                                                                                                                              |                                                                                                                                           
gACACCGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGCCCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGc                                                                                                                                       <  5:17924/148‑1 (MQ=255)
  cGCCGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGCCCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCgg                                                                                                                                    <  8:27527/149‑1 (MQ=255)
   gCCGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCCGCCCTGACACATTCCCAAGCCCCATCAAAAAGCCCCGGCTCATGCGAGCCggg                                                                                                                                   <  5:80743/149‑1 (MQ=255)
   gCCGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGCCCTGACACATTCCCAAGCGACATAAAAAAGCCCCGGCTCGCATGAGCCggg                                                                                                                                   <  1:383678/149‑1 (MQ=39)
   gCCGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGCCCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCGCATGAGCCggg                                                                                                                                   <  6:143759/149‑1 (MQ=255)
   gCCGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGCCCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCGCATGAGCCggg                                                                                                                                   <  3:338609/149‑1 (MQ=255)
   gCCGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGCCCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCggg                                                                                                                                   <  6:374140/149‑1 (MQ=255)
    ccGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGCCCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCgggg                                                                                                                                  <  1:427212/149‑1 (MQ=255)
     cGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGCCCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCGCATGAGCCGGGGc                                                                                                                                 <  3:318347/149‑1 (MQ=255)
       aTGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCATGACCAACACCTTGCAGCCCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCtt                                                                                                                               <  7:276630/149‑1 (MQ=255)
                ttCTAAGGCAGGGCGCCTGACTCAGTTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGCCCTTACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCtttttt                                                                                                                           <  2:269833/144‑1 (MQ=255)
                   tAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGCCCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCt                                                                                                                   >  2:363609/1‑149 (MQ=255)
                      ggCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGCCCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTtgc                                                                                                                >  7:264562/1‑149 (MQ=255)
                       gCAGGGCGCCTGACTCAGGTTTTGCGGGGGCGCTCGATCTTATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGCCCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGTCTCATGCGAGCCGGGGCTTTTTTATGTCGCTtgct                                                                                                               <  4:272976/149‑1 (MQ=255)
                                     tCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCAGCTGACCAACACATTGCAGCCATGACACATACCAAAGCCCCATAAAAAACCCCCGCAACATGCGAGCCGGGCCTTTTTAATTACCATTGATGCAAACAGCCttt                                                                                                  >  1:308137/1‑149 (MQ=255)
                                            ttGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGCCCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCAGGCGACCCGGGGCGTTTTTATGTCGCGTGCTGCAATCAGCCGTTGAacacgt                                                                                          >  1:386813/1‑147 (MQ=255)
                                                 tGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCACTACCTTGCAGCCCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATcc                                                                                     <  1:363609/149‑1 (MQ=255)
                                                                                                       cTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTc                                >  7:403159/1‑149 (MQ=255)
                                                                                                          acacATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTaa                                                                   <  4:348052/111‑1 (MQ=255)
                                                                                                          acacATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTaa                                                                   >  3:348052/1‑111 (MQ=255)
                                                                                                          acacATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGAt                             <  8:403159/149‑1 (MQ=255)
                                                                                                           cacaTTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATg                            <  8:264562/149‑1 (MQ=255)
                                                                                                            acaTTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTTATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATgg                           >  5:372529/1‑149 (MQ=255)
                                                                                                                         ccATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCcac              >  3:205525/1‑149 (MQ=255)
                                                                                                                              aaaaaGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGGGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCAt         >  5:257246/1‑149 (MQ=255)
                                                                                                                               aaaaGCCCCGGCTCGCATGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCATc        >  5:38063/1‑149 (MQ=255)
                                                                                                                                aaaGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCATCg       >  1:192684/1‑149 (MQ=255)
                                                                                                                                  aGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGAtt                                 >  7:25996/1‑121 (MQ=255)
                                                                                                                                  aGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGAtt                                 <  8:25996/121‑1 (MQ=255)
                                                                                                                                   gCCCCGGCTCGCATGAGCCGGGGCTTTTTTATGGGGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCATCGGa     >  7:51971/1‑148 (MQ=38)
                                                                                                                                    ccccGGCTCGCATGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCATCGGaaa   >  6:421791/1‑149 (MQ=255)
                                                                                                                                     cccGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCATCGGAAac  >  4:353005/1‑149 (MQ=255)
                                                                                                                                      ccGGCTCATGATAGCCGGGGCTTTTTAATGTCGCTTGCTGCAATCAGCCGTTGAACACTTAATCCACGCTCGTCACCGGGTAAAGCTTCGCATAAGGCAGCGTAGCAACACCGTATTCGAAGGCATACTTGCCCACAGCATCGAAAac  >  8:90013/1‑148 (MQ=255)
                                                                                                                                              |                                                                                                                                           
GACGCCGATGGATCTGTTCTAAGGCAGGGCGCCTGACTCAGGTTTTGCGTGGGCGCTCGATCTGATAGGCGCCACAAGTGCCCTGACCAACACCTTGCAGCCCTGACACATTCCCAAGCCCCATAAAAAAGCCCCGGCTCATGCGAGCCGGGGCTTTTTTATGTCGCTTGCTGCAATCAGCCGTTGAACACTTCATCCACGCTGGTCAGCGGGTAATGCTTCGGATAAGGCAGGGTAGCCACGCCGGATTCGATGGCAGCCTTGGCCACAGCATCGGAAAC  >  NC_002947/5807844‑5808124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: