| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,938,662 | T→A | 6.5% | L408Q (CTG→CAG) | rbbA → | ribosome‑associated ATPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,938,662 | 0 | T | A | 6.5% | 282.9 / 5.6 | 91 | L408Q (CTG→CAG) | rbbA | ribosome‑associated ATPase |
| Reads supporting (aligned to +/- strand): ref base T (45/40); new base A (4/2); total (49/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGCAGAACCTGGCCCTGCATGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGACCATTTTCCTCTCCAC > NC_002947/5938515‑5938809 | ggCAGAACCTGGCCCTGCATGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTg > 1:239398/1‑149 (MQ=255) gCAGAACCTGGCCCTGCATGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGt > 7:167917/1‑149 (MQ=255) gAACCTGGCCCTGCATGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGc < 3:193213/149‑1 (MQ=255) aaCCTGGCCCTGCATGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCt > 6:367366/1‑149 (MQ=255) aaCCTGGCCCTGCATGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGACAGGCGCt > 7:225650/1‑149 (MQ=255) ccTGGCCCTGCCTGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGCCCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTgg > 7:174566/1‑149 (MQ=255) ccTGGCCCTGCATGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTgg > 2:297901/1‑149 (MQ=255) gCCCTGCATGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGACAGGCGCTGGcg < 8:225650/147‑2 (MQ=255) cccTGCATGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTg < 5:117416/149‑1 (MQ=255) cTGCATGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑Gc < 8:167917/149‑1 (MQ=255) cATGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑g‑‑‑‑‑g < 7:163861/148‑1 (MQ=255) cATGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑g‑‑‑‑‑g < 3:234861/148‑1 (MQ=255) aTGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑Gtt < 5:158102/149‑1 (MQ=255) tGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTc < 5:367366/149‑1 (MQ=255) cGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCa < 2:149685/149‑1 (MQ=255) gTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGcc > 8:338784/1‑149 (MQ=255) cGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCg < 6:319376/148‑1 (MQ=255) gACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCgg > 6:404749/1‑148 (MQ=255) gACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCgg < 7:15072/148‑1 (MQ=255) aCTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGaa < 2:12363/149‑1 (MQ=255) ttGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGt > 1:106403/1‑149 (MQ=255) gCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCACCCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCt > 2:185642/1‑149 (MQ=255) cccAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCtt > 2:143752/1‑149 (MQ=255) cccAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCt < 5:254208/148‑1 (MQ=255) ccAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTg < 2:168432/149‑1 (MQ=255) ccAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCACCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCtt > 7:215568/1‑148 (MQ=255) cAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGa < 6:206642/149‑1 (MQ=255) cAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGa > 5:140999/1‑149 (MQ=255) aaaGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGAt > 6:278267/1‑149 (MQ=255) ccGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCGGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTc < 2:107620/149‑1 (MQ=255) cGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTc > 5:15824/1‑148 (MQ=255) agagCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTcgac < 3:100049/149‑1 (MQ=255) agCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTcgacga < 5:278267/149‑1 (MQ=255) ccAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGa > 1:59743/1‑149 (MQ=255) cAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCACCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGAc < 8:215568/149‑1 (MQ=255) cATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCg < 1:297901/149‑1 (MQ=255) gATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGt < 3:17043/149‑1 (MQ=255) aggAGCTGAGCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTc < 6:219634/147‑1 (MQ=255) aTGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTc < 6:15824/149‑1 (MQ=255) gCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGAcc > 4:366874/1‑149 (MQ=255) aTCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCccgc > 6:225773/1‑149 (MQ=255) gcgcTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGccgccc > 1:138688/1‑149 (MQ=255) gcTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGccgcccgc > 8:305830/1‑149 (MQ=255) cTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCcgcg < 5:225773/149‑1 (MQ=255) ttCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCAG‑‑‑‑GNGGGGGTGCGGGAGG‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGAcccc > 1:141978/1‑149 (MQ=255) ttCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGAATGAGGGGGT‑‑‑‑GC‑‑‑‑‑GATAGAGTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGAcccc > 1:136748/1‑149 (MQ=255) aCCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCgacgac > 7:132563/1‑149 (MQ=255) ccTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACt > 5:136958/1‑149 (MQ=255) cTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACtt > 4:186370/1‑149 (MQ=255) gccgcTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCt < 5:404749/148‑1 (MQ=255) ccgcTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTgg < 7:338784/149‑1 (MQ=255) cTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGgcgc < 1:143752/149‑1 (MQ=255) gCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCctgct > 7:114700/1‑149 (MQ=255) gCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCctgct > 6:192227/1‑149 (MQ=255) ccGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCctgctg > 5:315179/1‑149 (MQ=255) gACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTgg > 3:353165/1‑148 (MQ=255) aCCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTa < 2:138688/149‑1 (MQ=255) cAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGCCCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAg > 8:157519/1‑148 (MQ=255) cAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAg > 6:297878/1‑148 (MQ=255) aaCCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGaa > 1:15258/1‑149 (MQ=255) aaCCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGaa > 1:34692/1‑149 (MQ=255) ccGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACt < 5:325308/149‑1 (MQ=255) ccGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACt < 2:106403/149‑1 (MQ=255) ggCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCcg > 5:367935/1‑149 (MQ=255) cgcCCTGCCCCTTGGTTTGCGCGAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑TTTCTGCATCGCGCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCTACGACTTCTGGCGCCTGCTGGTAGAACTGTCCcgc < 8:217594/148‑1 (MQ=255) ccccTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAgg < 2:15258/148‑1 (MQ=255) ccccTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAgg < 6:136958/148‑1 (MQ=255) ccTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCg > 3:257007/1‑149 (MQ=255) cTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAAc < 7:299041/130‑1 (MQ=255) cTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAAc > 8:299041/1‑130 (MQ=255) cTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGt > 5:81356/1‑149 (MQ=255) cTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGt < 2:239398/149‑1 (MQ=255) cTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGt < 6:140999/149‑1 (MQ=255) ggTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGa < 8:132563/148‑1 (MQ=255) gTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGAc < 1:118589/148‑1 (MQ=255) tttGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGACCa > 3:6998/1‑149 (MQ=255) actgcCAGCGACAGGCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGACCAtt > 7:218244/4‑149 (MQ=255) ctgcCAGCGACAGGCGCTGGCG‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGACCAttt > 5:432487/3‑149 (MQ=255) tgcCAGCGACAGGCGCTGGCG‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGa < 8:302019/141‑1 (MQ=255) tgcCAGCGACAGGCGCTGGCG‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGa > 7:302019/2‑142 (MQ=255) cgcCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGACCAtttt > 4:107023/1‑149 (MQ=255) gcCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTccc > 7:178624/1‑126 (MQ=255) gcCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTccc < 8:178624/126‑1 (MQ=255) gcCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGACCATTTTc < 6:81356/149‑1 (MQ=255) cAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGCCCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGACCATTTTCct > 4:127464/1‑149 (MQ=255) cAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGACCATTTTCct > 7:139607/1‑149 (MQ=255) cAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGACCATTTTCct < 7:305830/149‑1 (MQ=255) cAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGACCATTTTCct > 5:47099/1‑149 (MQ=255) gcgcCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGACCATTTTCctct > 5:405870/1‑149 (MQ=255) ccTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGACCCTTTTCCTCTcca > 4:315450/1‑149 (MQ=255) cTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGACCATTTTCCTCTccac > 2:207053/1‑149 (MQ=255) | GGCAGAACCTGGCCCTGCATGCCCGCCTGTTCGACTTGCCCAAAGCCGAGAGCGCCCAGCGCATCGATGAGCTGATCGAGCGCTTCGACCTCGCCGCTATCGCCGACCAACCGTCTGGCGCCCTGCCCCTTGGTTTGCGCCAGCGCCTGTCGCTGGCA‑‑‑‑‑GTG‑‑‑‑‑GC‑‑‑‑‑G‑‑‑‑‑GTTCTGCATCGCCCGGAAGTCTTGATCCTCGACGAACCGACCTCCGGCGTCGACCCCGCCGCCCGCGACGACTTCTGGCGCCTGCTGGTAGAACTGTCCCGCGAGCAGGGCGTGACCATTTTCCTCTCCAC > NC_002947/5938515‑5938809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |