| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,948,277 | C→T | 100% | R66H (CGT→CAT) | rho ← | transcription termination factor Rho |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,948,277 | 0 | C | T | 98.4% | 248.4 / ‑4.8 | 77 | R66H (CGT→CAT) | rho | transcription termination factor Rho |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (38/37); minor base A (1/1); total (39/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
AGCAGGGCGAAGTAACGCTCCCCTTCCTTCGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAACGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGTTTTCGATGCCCATCTGT > NC_002947/5948133‑5948417 | agcatGGCGACGTAACGCGCCCCTTCCTTCGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAg < 6:301264/149‑1 (MQ=255)agcagGGCGAAGTAACGCTCCCCTTCCTTCGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCa < 7:150677/148‑1 (MQ=255) gcagGGCGAAGTAACGCTCCCCTTCCTTCGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAg > 3:231716/1‑148 (MQ=255) cagGGCGAAGTAACGCTCCCCTTCCTTCGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAgg > 2:179943/1‑148 (MQ=255) gggCGAAGTAACGCTCCCCTTCCTTCGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGgaaa > 7:372549/1‑149 (MQ=255) ggCGAAGTAACGCTCCCCTTCCTTCGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGgaaac > 1:407075/1‑149 (MQ=255) gCTCCCCTTCCTTAGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATcc > 2:67469/1‑149 (MQ=255) tCCCCTTCCTTCGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTg > 2:121922/1‑149 (MQ=255) ccccTTCCTTGGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGGATGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTg < 4:177916/148‑1 (MQ=255) cccTTCCTTCGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTgg < 8:169760/148‑1 (MQ=255) cccTTCCTTCGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTg < 4:231716/147‑1 (MQ=255) cccTTCCTTCGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTg < 6:327940/147‑1 (MQ=255) cccTTCCTTCGGTGGGCGGATCTTGCCGACGATGGTGTCCCCGGTACGAAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGCTAGGACTCAT‑CAGCCGAAAGCAGGACACCGAAACCATCCTg > 4:298415/1‑147 (MQ=255) ccttccttCGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGgag < 7:125439/149‑1 (MQ=255) cttcGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAAtc < 6:326679/148‑1 (MQ=255) ttcGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAAtctc > 1:54218/1‑149 (MQ=255) ggTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCa < 5:403641/118‑1 (MQ=255) ggTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCa > 6:403641/1‑118 (MQ=255) gTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAAtctc > 8:16197/1‑145 (MQ=255) gTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAAtctc < 7:16197/145‑1 (MQ=255) tGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCa > 1:252735/1‑149 (MQ=255) gCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGc > 6:17622/1‑149 (MQ=255) ggATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCg < 7:189905/149‑1 (MQ=255) tGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGGAGCCGAGGCCATCCTGGAGAATCTCCCGCCCGCCGTCAccc > 8:47577/1‑149 (MQ=255) ccGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCATATAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCAccc < 1:337772/148‑1 (MQ=255) gaTGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGAtc > 7:262412/1‑148 (MQ=255) gaTGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGAtc > 1:417169/1‑148 (MQ=255) gtgtCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCtt < 6:81380/148‑1 (MQ=255) gtgtCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTc > 6:416682/1‑149 (MQ=255) gtgtCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTc < 2:54218/149‑1 (MQ=255) tgtCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTcg > 5:55447/1‑149 (MQ=255) tgtCGCCGATACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCAc > 2:309026/1‑135 (MQ=255) tgtCGCCGATACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAAAGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCAc < 1:309026/135‑1 (MQ=255) tCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGATTCTCCAGCACGCCGTCCCCCGAGCTCTCTTcgcc > 8:366463/1‑149 (MQ=255) tCGCCGGTACGCAGGTTGAAACGGCAGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTcgcc < 2:53251/149‑1 (MQ=255) ccGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGCCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCATCGACGCt > 8:94127/1‑149 (MQ=255) cGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCtt > 4:377274/1‑149 (MQ=255) tACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTc < 7:47577/149‑1 (MQ=255) cGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCg < 5:416682/148‑1 (MQ=255) gCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCa < 2:407075/149‑1 (MQ=255) gCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGC‑TTTCGCAt < 1:121922/149‑1 (MQ=255) cAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCAt < 1:67469/149‑1 (MQ=255) aGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATg > 5:427630/1‑149 (MQ=255) gTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGc < 6:55447/148‑1 (MQ=255) ttGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGctt < 4:113505/149‑1 (MQ=255) aaaCGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGcttctt > 8:84165/1‑149 (MQ=255) ggcggATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTcagc < 3:377274/149‑1 (MQ=255) gcggATCTGGCTTGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGTAACCATCCTGGAGAATCTCCATCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTcagca < 3:298415/149‑1 (MQ=255) gagaCATAGATATCGTCAGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGACACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTAACCAGGGCGAAAATAACGTc > 8:169954/1‑149 (MQ=255) agaCATAGATTTCGTCGTGTCCGGCCAGGTAGGACTCAT‑CAGCCGAATGGACGAACCCCAACCCATCCTGGAGAAGCTCCAGCACGCCGTCCCCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTcc < 6:104393/149‑1 (MQ=255) atatCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTgcg > 5:398991/1‑149 (MQ=255) tCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGcgcg > 4:96695/1‑148 (MQ=255) tCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGcgcg < 8:262412/148‑1 (MQ=255) cGTCTGGGCCGGCCAGCTAGGACGCAT‑CAGCCGAATCCAGGAAACCGAAACCATCCTGCAGAATCTCCAGCACGCCGTCACCCGAGATCTCTACGCCGCTTTTCGCATGCTTCTTCAGCAGCGCGAAAATCACGTCCTGTTTGCGCGaa > 2:425400/1‑149 (MQ=255) gTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAAc > 2:423490/1‑149 (MQ=255) tCTGGGCCGGCCAGGTAGGACTCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACg < 7:398512/149‑1 (MQ=255) ggccggccAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACggg < 4:112401/147‑1 (MQ=255) ggccggccAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGcc < 5:17622/149‑1 (MQ=255) gccggccAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAGTCTCCCGCACGCCGTCCCCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGc > 8:52379/1‑147 (MQ=255) gccggccAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCt > 5:147771/1‑131 (MQ=255) gccggccAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCt < 6:147771/131‑1 (MQ=255) gccggccAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCa < 1:179943/149‑1 (MQ=255) gccggccAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCa > 3:178938/1‑149 (MQ=255) cAGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGtttt < 7:169954/149‑1 (MQ=255) aGGTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGTTTTc < 5:366437/149‑1 (MQ=255) gTAGGACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGTTTTCGa > 7:347699/1‑149 (MQ=255) ggACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGTTTTCGATGc < 8:347699/149‑1 (MQ=255) gACGCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGTTTTCGATGcc > 1:276318/1‑149 (MQ=255) gCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGTTTTCGATGccc > 6:443811/1‑147 (MQ=255) gCAT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGTTTTCGATGccc < 5:443811/147‑1 (MQ=255) aT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGTTTTCGATGCCCATCt < 7:366463/149‑1 (MQ=255) aT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGTTTTCGATGCCCATCt > 3:146065/1‑149 (MQ=255) aT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGTTTTCGATGCCCATCt > 4:123446/1‑149 (MQ=255) aT‑CAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGTTTTCGATGCCCATCt > 1:29172/1‑149 (MQ=255) cAGCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGTTTTCGATGCCCATCTGt > 6:260106/1‑149 (MQ=255) gCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGTTTTCGATGc < 6:441830/139‑1 (MQ=255) gCCGAATGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGTTTTCGATGc > 5:441830/1‑139 (MQ=255) | AGCAGGGCGAAGTAACGCTCCCCTTCCTTCGGTGGGCGGATCTTGCCGACGATGGTGTCGCCGGTACGCAGGTTGAAACGGCGGATCTGGCTGGGCGAGACATAGATATCGTCTGGGCCGGCCAGGTAGGACGCAT‑CAGCCGAACGCAGGAAACCGAAACCATCCTGGAGAATCTCCAGCACGCCGTCACCCGAGATCTCTTCGCCGCTTTTCGCATGCTTCTTCAGCAGGGCGAAAATCACGTCCTGTTTGCGCGAACGGGCCATGTTTTCGATGCCCATCTGT > NC_002947/5948133‑5948417 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |