| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,948,683 | T→A | 7.1% | intergenic (‑64/+18) | PP_mr62 ← / ← trxA | Pseudomon‑Rho regulatory region/thioredoxin I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,948,683 | 0 | T | A | 7.1% | 248.6 / 7.5 | 84 | intergenic (‑64/+18) | PP_mr62/trxA | Pseudomon‑Rho regulatory region/thioredoxin I |
| Reads supporting (aligned to +/- strand): ref base T (41/37); new base A (4/2); total (45/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.89e-01 | |||||||||||
GATGGCGACAGGATCGCGTACTGATTCGAATTAGGGATGCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGCACACCGTGCTTGGCCGGGG > NC_002947/5948541‑5948828 | gATGGCGACAGGATCGCGTACTGATTCGAATTAGGGATGCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCgg < 7:25857/148‑1 (MQ=255) gACAGGATCGCGTACTGATTCGAATTAGGGATGCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCttt > 3:414655/1‑149 (MQ=255) aCAGGATCGCGTACTGATTCGAATTAGGGATGCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCtttt < 7:17210/149‑1 (MQ=255) aGGATCGCGTACTGATTCGAATTAGGGATGCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTtca < 5:95772/149‑1 (MQ=255) cgcgTACTGATTCGAATTATGGATGCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAAGGCCCCGCAAATGCGGGGCttttcttttt < 4:297216/148‑7 (MQ=255) cTGATTCGAATTAGGGATGCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGt < 4:414655/148‑1 (MQ=255) tGATTCGAATTAGGGATGCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTgg > 3:82501/1‑149 (MQ=255) aTTCGAATTAGGGATGCTTCGGCGACGGCATGTAGAGGTCACTGGATAAGCAGTGCGAGGGCGAATGTAACTCTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCTCAGGTg < 4:285477/146‑1 (MQ=255) ttCGAATTAGGGATGCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTgg < 1:217330/146‑1 (MQ=255) ttCGAATTAGGGATGCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTgg > 2:217330/1‑146 (MQ=255) gAATTAGGGATGCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTc < 4:112605/148‑1 (MQ=255) aTTAGGGATGCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAg < 5:133931/149‑1 (MQ=255) aGGGATGCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGaa > 7:305878/1‑149 (MQ=255) gcgATGCTGCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAAt < 8:193198/147‑1 (MQ=255) gCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGc > 5:434422/1‑149 (MQ=255) gCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGc > 1:170875/1‑149 (MQ=255) cGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAg < 3:421968/148‑1 (MQ=255) cGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGc > 1:2224/1‑149 (MQ=255) cGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGAt > 2:381169/1‑149 (MQ=255) aTGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCggg > 1:372866/1‑97 (MQ=255) aTGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCggg < 2:372866/97‑1 (MQ=255) gTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGa > 6:193474/1‑148 (MQ=255) tAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGa > 6:309902/1‑147 (MQ=255) gagGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAGAGAAAA‑GACCCGCATTTGCGGGGACTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGt > 7:379291/1‑149 (MQ=255) gagGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTATCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGt > 1:97386/1‑149 (MQ=255) gggCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTgc > 8:86080/1‑149 (MQ=255) gAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTtc < 1:133711/90‑1 (MQ=255) gAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTtc > 2:133711/1‑90 (MQ=255) gAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCt > 1:383566/1‑149 (MQ=255) aaaGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTtg > 3:301029/1‑149 (MQ=255) aGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTtggt < 1:381169/149‑1 (MQ=255) gCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTtggtg > 7:210918/1‑149 (MQ=255) cAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTtggtgg > 4:43507/1‑149 (MQ=255) gCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGt > 2:11082/1‑149 (MQ=255) ccGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGtt > 2:293606/1‑149 (MQ=255) aaTGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGcc < 3:43507/149‑1 (MQ=255) tAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTc > 4:138792/1‑149 (MQ=255) acacTTGAGTTTTTCTGCGTCTAGTGATCTGAAATAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTTGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCt < 8:379291/148‑1 (MQ=255) acTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTc < 6:358521/145‑1 (MQ=255) acTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTc > 5:358521/1‑145 (MQ=255) acTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGa < 8:210918/149‑1 (MQ=255) cTTGCTTTTTTCAGCGTCTAGTGCTATGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGaa < 8:173520/149‑1 (MQ=255) ttGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGaa > 4:169339/1‑148 (MQ=255) gCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACa < 8:305878/148‑1 (MQ=255) gCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACa < 1:258748/148‑1 (MQ=255) ttttCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCAt > 6:87504/1‑148 (MQ=255) tGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTtg > 1:273404/1‑111 (MQ=255) tGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTtg < 2:273404/111‑1 (MQ=255) gCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAATCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTc > 1:127474/1‑149 (MQ=255) aGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCgg < 7:121694/145‑1 (MQ=255) aGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCgg < 7:127930/145‑1 (MQ=255) aGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCgg > 8:121694/1‑145 (MQ=255) aGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCgg > 8:127930/1‑145 (MQ=255) gTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGAt < 6:434422/147‑1 (MQ=255) tGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATAc > 3:402641/1‑148 (MQ=255) tGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATAc > 3:396264/1‑148 (MQ=255) ctctGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAATCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCAc < 2:127474/149‑1 (MQ=255) ctctGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCAc < 2:383566/149‑1 (MQ=255) ctctGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCAc < 3:138792/149‑1 (MQ=255) tGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCgg < 1:129817/138‑1 (MQ=255) tGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCgg > 2:129817/1‑138 (MQ=255) gAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGca > 6:438543/1‑148 (MQ=255) aaaaaGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACCGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGca < 5:309902/147‑1 (MQ=255) aaaaaGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGcaca > 2:25127/1‑149 (MQ=255) aaaaaGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGcaca > 5:398326/1‑149 (MQ=255) aaaaaGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGcaca > 1:417952/1‑149 (MQ=255) aaagaaaa‑gCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTc < 2:219680/50‑1 (MQ=255) aaagaaaa‑gCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTc > 1:219680/1‑50 (MQ=255) aaagaaaa‑gCCCCGAATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCAAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGAATCAGAGTCGGGATACAACGCACAcc > 6:112048/1‑149 (MQ=255) aagaaaa‑gCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGCACACCg > 7:260092/1‑149 (MQ=255) gaaaag‑gCCCCGCAAATGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCATCCTTGGTGGCTTCGACGTTGCCGTTCTTGaa < 6:332894/115‑1 (MQ=255) gaaaag‑gCCCCGCAAATGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCACCCTTGGTGGCTTCGACGTTGCCGTTCTTGaa > 5:332894/3‑117 (MQ=255) gaaaag‑gCCCCGCAAATGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGCACACCGt > 4:427009/3‑149 (MQ=255) gaaaag‑gCCCCGCAAATGCGGGG‑CTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGCACACCGTg > 2:33248/3‑149 (MQ=255) gaaaa‑gCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGCACACCGTg > 7:189563/1‑149 (MQ=255) aaaag‑gCCCCGCAAATGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGCACACCGTg > 5:195377/2‑149 (MQ=255) aaa‑gCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGCACACCGTGCt > 5:159547/1‑149 (MQ=255) ccGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGCACACCGTGCTTGGCCg < 4:396264/149‑1 (MQ=255) ccGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGCACACCGTGCTTGGCCg < 4:402641/149‑1 (MQ=255) cGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGCACACCGTGCTTGGCCgg < 3:169339/149‑1 (MQ=255) cGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGCACACCGTGCTTGGCCgg < 1:11082/149‑1 (MQ=255) gCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAAGCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGCACACCGTGCTTGGCCggg < 4:423918/149‑1 (MQ=255) cATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGCACACCGTGCTTGGCCgggg < 3:77958/149‑1 (MQ=255) cATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGCACACCGTGCTTGGCCgggg < 2:97386/149‑1 (MQ=255) | GATGGCGACAGGATCGCGTACTGATTCGAATTAGGGATGCTTCGGCGACGGCATGTAGAGGGCACTGGAAAAGCAGTGCGAGGCCGAATGTAACACTTGCTTTTTTCTGCGTCTAGTGCTCTGAAAAAGAAAA‑GCCCCGCATTTGCGGGGCCTTTTCACATCACAGGTGGGCGTCGAGGAATGCGGCCAGCTGCGATTTGGACAGTGCGCCAACCTTGGTGGCTTCGACGTTGCCGTTCTTGAACAGCATCAGCGTCGGGATACCACGCACACCGTGCTTGGCCGGGG > NC_002947/5948541‑5948828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |