| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,965,575 | A→G | 8.9% | intergenic (+73/+27) | had → / ← PP_5232 | (S)‑2‑haloacid dehalogenase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,965,575 | 0 | A | G | 8.9% | 240.6 / 11.8 | 90 | intergenic (+73/+27) | had/PP_5232 | (S)‑2‑haloacid dehalogenase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (38/44); new base G (2/6); total (40/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.67e-01 | |||||||||||
TGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAATTCTTCCATCGCCTTGGCCAG > NC_002947/5965430‑5965721 | tGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGAcgg > 2:101176/1‑149 (MQ=255)tGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGACGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGAcgg > 2:182382/1‑149 (MQ=255) cGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGAcggcgg < 3:36618/149‑1 (MQ=255) gATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCggg < 4:245239/149‑1 (MQ=255) gATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCggg > 7:62880/1‑149 (MQ=255) tCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑t > 2:267/1‑149 (MQ=255) aGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑tt < 2:275032/148‑1 (MQ=255) ggCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑tttt < 5:435889/149‑1 (MQ=255) gcgcCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCAAAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑ttttt > 7:72921/1‑149 (MQ=255) cgcCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCTTGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCCGTCGCTGCGGGC‑tttttt < 5:209065/149‑1 (MQ=255) cgcCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCCGTCGCTGCGGGC‑tttttt < 5:349049/149‑1 (MQ=255) cgcCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCCGTCGCTGCGGGC‑tttttt < 3:320323/149‑1 (MQ=255) gcCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCCGTCGCTGCGGGC‑tttttta < 8:135097/149‑2 (MQ=255) gcCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCCGTCGCTGCGGGC‑tttttta < 6:148430/149‑2 (MQ=255) gcCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTg > 4:69680/1‑149 (MQ=255) ccGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGc < 3:69680/149‑1 (MQ=255) ggATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGTCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGa < 7:333806/149‑1 (MQ=255) ggATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGa < 7:339766/149‑1 (MQ=255) gATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGAt < 6:276697/149‑1 (MQ=255) cGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGc > 1:285745/1‑148 (MQ=255) gAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCa > 2:194040/1‑149 (MQ=255) ccAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTg > 7:372238/1‑134 (MQ=255) ccAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTg < 8:372238/134‑1 (MQ=255) aGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑ttttt > 6:114322/1‑130 (MQ=255) aGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑ttttt < 5:114322/130‑1 (MQ=255) tGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCCCAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGggcg > 4:382995/1‑149 (MQ=255) tGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGggcg > 7:263757/1‑149 (MQ=255) tCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGggcg < 6:401943/147‑1 (MQ=255) gCAGCTGCCCGACGTGCTCGCGCGCTGTCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTg < 1:182382/149‑1 (MQ=255) cAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGc > 5:76664/1‑149 (MQ=255) cccGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTAc < 6:37330/148‑1 (MQ=255) cccGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACt > 6:226209/1‑149 (MQ=255) aCGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACttgtt > 1:121830/1‑149 (MQ=255) cTCGCGCGCTGGCGGGTAGGGTCGCGGCTTTGCGGCCAATGCGCGGGAAGGGGAAACACAAAACCCACCGGCATAAAAAAGCCCGCTGCTACGGGGGGT‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCt < 1:267/148‑1 (MQ=255) cTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGCTTTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCt < 1:101176/149‑1 (MQ=255) cTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCt < 8:91158/148‑1 (MQ=255) tCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTgg > 3:197858/1‑149 (MQ=255) cgcgcgCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGc < 2:300165/149‑1 (MQ=255) gcgcgcTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGct > 3:118999/1‑149 (MQ=255) gcgcgcTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGc < 5:226209/148‑1 (MQ=255) gcgcgcTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGc < 8:62880/148‑1 (MQ=255) gctggcgctgACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGcttctt > 1:18206/1‑149 (MQ=255) ctggcgctgACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTg < 3:162356/149‑1 (MQ=255) tcgctgACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACAAAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGc < 4:405867/148‑1 (MQ=255) gcgctgACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTggg < 4:404515/148‑1 (MQ=255) gctgACGGGGGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCgg < 2:7825/149‑1 (MQ=255) gctgACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCgg < 6:118687/149‑1 (MQ=255) gggAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACTCAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGc > 2:280648/1‑149 (MQ=255) gggAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCAGAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGc < 4:197858/149‑1 (MQ=255) ccGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCa > 8:299550/1‑149 (MQ=255) ccGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCa > 5:335792/1‑149 (MQ=255) cGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCAc > 8:9520/1‑149 (MQ=255) ggCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGATGGCCt > 8:74014/1‑149 (MQ=255) gCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTc < 2:273330/149‑1 (MQ=255) gCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTc > 6:211339/1‑149 (MQ=255) cccATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTc > 3:213730/1‑148 (MQ=255) ccATTCTCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCTTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCAACCACGTTGGCCTCGa < 6:217788/149‑1 (MQ=255) ttCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGACTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACt > 2:435096/1‑148 (MQ=255) gcgGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGTTAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCt < 8:310703/149‑1 (MQ=255) gcgGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGggcgg < 1:122967/88‑1 (MQ=255) gcgGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGggcgg > 2:122967/1‑88 (MQ=255) gcgGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTcc < 1:194040/148‑1 (MQ=255) gggcacgggcaACACAAACCCCCCAGCCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCCGCCACTCCGATCGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTGGGCCTCGACTTCCTGc < 2:285745/149‑1 (MQ=255) gcacgggcaACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCAc > 8:204979/1‑149 (MQ=255) acgggcaACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCt > 8:149294/1‑149 (MQ=255) cgggcaACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCtt < 4:118999/149‑1 (MQ=255) ggcaACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGTGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTgc < 2:204323/149‑1 (MQ=255) gcaACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTgcc < 5:210553/149‑1 (MQ=255) gcaACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTgcc > 3:136884/1‑149 (MQ=255) cacaAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGccgccg > 3:265404/1‑149 (MQ=255) aaaCCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCgag < 2:121830/149‑1 (MQ=255) ccACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAg > 3:259965/1‑149 (MQ=255) cacaGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAg > 2:211597/1‑148 (MQ=255) acaGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAgg > 6:399045/1‑148 (MQ=255) aGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAAt < 6:150337/149‑1 (MQ=255) ggCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAAtt < 2:18206/149‑1 (MQ=255) tAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTTCACCTTGCCGCCGCGAGAAAGGAAttcttc < 7:299550/149‑1 (MQ=255) tAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAAttcttc > 7:147781/1‑149 (MQ=255) tAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAAttcttc < 7:149294/149‑1 (MQ=255) aaaaaaGCCCGCCGTCGCTGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGaa > 6:224693/1‑142 (MQ=255) aaaaaaGCCCGCCGTCGCTGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGaa < 5:224693/142‑1 (MQ=255) aaaaaaGCCCGCCGTCGCTGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAAttcttc > 1:65099/1‑148 (MQ=255) aaaaaGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAATTCTTCCa > 7:275/1‑149 (MQ=255) aaGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGACTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAATTCTTCCATCg < 1:435096/149‑1 (MQ=255) aGCCAGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAATTCTTCCATCGc < 1:211597/149‑1 (MQ=255) gCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAATTCTTCCATCGcc < 7:74014/149‑1 (MQ=255) gCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAATTCTTCCATCGcc < 8:72921/149‑1 (MQ=255) cGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAATGAATTCTTCCATCGCCTTg < 1:280648/149‑1 (MQ=255) aGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAATTCTTCCATCGCCTTGGc > 5:234322/1‑148 (MQ=255) aGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAATTCTTCCATCGCCTTGGc > 2:253131/1‑148 (MQ=255) aCGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAATTCTTCCATCGCCTTGGCCAg < 3:207483/147‑1 (MQ=255) aCGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAATTCTTCCATCGCCTTGGCCAg > 4:207483/1‑147 (MQ=255) | TGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGC‑TTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGGGTCAGCGACCACGTTGGCCTCGACTTCCTGCACCTTGCCGCCGCGAGAAAGGAATTCTTCCATCGCCTTGGCCAG > NC_002947/5965430‑5965721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |