| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,049,442 | A→T | 5.5% | K102* (AAG→TAG) | spoT → | bifunctional (p)ppGpp synthase/hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,049,442 | 0 | A | T | 5.5% | 315.9 / 4.8 | 101 | K102* (AAG→TAG) | spoT | bifunctional (p)ppGpp synthase/hydrolase |
| Reads supporting (aligned to +/- strand): ref base A (44/51); new base T (2/4); total (46/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 | |||||||||||
Only 100 of 101 total aligned reads displayed.
CCAGCATCCTCGCCGACATGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCTGT > NC_002947/6049296‑6049589 | ccAGCATCCTCGCCGACATGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGTGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAg < 5:359733/149‑1 (MQ=255) cAGCATCCTCGCCGACATGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGc > 7:214909/1‑149 (MQ=255) cAGCATCCTCGCCGACATGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGc < 2:17805/149‑1 (MQ=255) cAGCATCCTCGCCGACATGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGc > 7:297471/1‑149 (MQ=255) gCATCCTCGCCGACATGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTg < 6:42566/149‑1 (MQ=255) tCCTCGCCGACATGCACATGGACCATCAGAGCCTGATGGCGGCTATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGAcc > 6:178041/1‑149 (MQ=255) ccTCGCCGACATGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGAcc > 4:146094/1‑148 (MQ=255) gCCGACATGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTTCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCTTGCTGAccccat < 5:202186/148‑4 (MQ=255) gCCGACATGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCTTGCTGAcccca < 6:79923/147‑3 (MQ=255) gCCGACATGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGa < 8:131927/148‑1 (MQ=255) ccGACATGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCTTGCTGAccccatcg < 8:51231/149‑6 (MQ=255) cGACATGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATg > 5:170120/1‑148 (MQ=255) cATGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAAtt > 5:53651/1‑149 (MQ=255) aTGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAAttt < 2:92994/149‑1 (MQ=255) aTGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAAttt < 7:242381/149‑1 (MQ=255) tGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTc < 3:146032/149‑1 (MQ=255) gCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGa > 4:335703/1‑140 (MQ=255) gCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGa < 3:335703/140‑1 (MQ=255) gCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTc > 3:377079/1‑148 (MQ=255) cacaTGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTc > 4:421258/1‑147 (MQ=255) cacaTGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCga < 4:416921/149‑1 (MQ=255) caTGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCgaga < 7:284435/149‑1 (MQ=255) aTGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGAcc < 2:118266/132‑1 (MQ=255) tGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCAAGAGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCgaga > 1:348402/1‑149 (MQ=255) tGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGAcc < 2:337335/149‑1 (MQ=255) tGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGAc > 2:53820/1‑148 (MQ=255) gACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGAcc > 3:4504/1‑147 (MQ=255) aTCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTCGTCGATGGGGTCAGCAAGATGACCCAGATGAATTTCGAGACCAAGGcc > 8:298029/1‑149 (MQ=255) aTCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATAGAAGACACCGGCATCGCCA‑‑AGGAAGCCATCAGCCAGCAGTTTGGAGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACAAAGGcc > 6:51853/1‑149 (MQ=255) tCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCg < 2:320042/149‑1 (MQ=255) ccTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGgcgc < 5:391518/149‑1 (MQ=255) ccTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGgcg > 8:302755/1‑148 (MQ=255) ccTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGgcg > 2:257037/1‑148 (MQ=255) cTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTGTGGCGCGTCCGTGGCCGAAGTGGTGGATGGGGTCAGCAAGCTGCCCGAGATGAATTTCGAGACCAAGGCCGAGgcg > 6:330661/1‑147 (MQ=255) gcCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGaaaa < 2:212600/149‑1 (MQ=255) cATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGAc < 8:405833/105‑1 (MQ=255) cATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGAc > 7:405833/1‑105 (MQ=255) cATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACt > 5:199392/1‑149 (MQ=255) tgctgcACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTc < 5:119297/149‑1 (MQ=255) tgctgcACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTc < 3:146094/149‑1 (MQ=255) gctgcACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTc > 5:355546/1‑148 (MQ=255) ctgcACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTcc < 8:142128/148‑1 (MQ=255) ctgcACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTc > 6:66796/1‑147 (MQ=255) ctgcACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTc > 1:400924/1‑147 (MQ=255) ctgcACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCa < 8:310961/149‑1 (MQ=255) tgcACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTc > 3:248931/1‑146 (MQ=255) gcACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCag > 6:317668/1‑148 (MQ=255) agctcctCGAAGACACCGGCACCGCCA‑‑AGGACGCCCGCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGGGGGGGGCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGatg < 8:226497/143‑1 (MQ=255) aTGTGATCGAAGACACCGGCCTCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGGTGGGGGCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGatg < 8:226504/149‑1 (MQ=255) tgtgATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGatgg < 4:335393/149‑1 (MQ=255) tgATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGatggcc < 1:257037/149‑1 (MQ=255) aTCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGatggccat > 1:214699/1‑149 (MQ=255) gAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCACGATGAATTTCGAGCCCAAGGCCGCGCCGCAGGCGGAAACCTGCCAGAAGatggccatggc > 5:443221/1‑149 (MQ=255) gACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGTCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGatggccatggccat < 8:214909/149‑1 (MQ=255) acCGGCATCGCCA‑‑AGGAACCCCTCACCCAGAACTTACGATAGAAAGTGGCACAATTAGACTATGAGGTAAGCAAGCTGACACAGAATAATTTCGAGACCAAGGCAGAGACCCAGGCGTAAAACTTCCAGAAGatggccatggccatggc > 6:214149/1‑149 (MQ=255) ccGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGatggccatggccatcttc < 3:374051/149‑5 (MQ=255) cGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGccc > 5:272971/1‑149 (MQ=255) cGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGccc > 5:225897/1‑149 (MQ=255) cGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGccc < 5:178041/149‑1 (MQ=255) gCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCcgc < 2:400924/149‑1 (MQ=255) gCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCcgc < 8:297471/149‑1 (MQ=255) cATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCcgcg < 4:248931/149‑1 (MQ=255) ccA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATc > 4:198981/1‑149 (MQ=255) ccA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATc > 2:72997/1‑149 (MQ=255) cA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATcc < 6:199392/149‑1 (MQ=255) aGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCT‑ATATCcgc < 8:115113/149‑1 (MQ=255) aGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGa < 3:392087/149‑1 (MQ=255) ccTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATcc > 1:267907/1‑149 (MQ=255) cTCCGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAAATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCt > 8:314907/1‑149 (MQ=255) cTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCt > 6:344668/1‑149 (MQ=255) caggcagcAGTTTTGCGAGAGCGTGGCAGAATTGGTCGATGTGGTCAGCTAGCTGTCCCAGATGAATTTCGAGACCAAGGCCGAGGGGAATTCGGAATTCTTCCAGTAGTTGTCCATGGACATGGGCCGGG‑ATATCGGGGTGATCGTg < 2:56726/148‑1 (MQ=255) agccagcAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTgg < 6:355546/148‑1 (MQ=255) agcagTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTc > 3:171866/1‑146 (MQ=255) gTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTgg < 5:344668/149‑1 (MQ=255) gTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTgg > 8:124989/1‑149 (MQ=255) gTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTgg < 6:170120/149‑1 (MQ=255) gagaCCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCGAATATCCGCGTGATCCTGGTCAAGCTGGCCGAcc < 1:53820/149‑1 (MQ=255) gagaCCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCg > 2:69111/1‑149 (MQ=255) agaCCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGAAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGc < 4:377079/149‑1 (MQ=255) gaCCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGcc < 3:198981/149‑1 (MQ=255) gaCCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGcc < 6:225897/149‑1 (MQ=255) gaCCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGcc < 5:66796/149‑1 (MQ=255) cGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGCCTGc < 3:421258/149‑1 (MQ=255) gTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGCCTGca > 6:52816/1‑149 (MQ=255) cGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATc > 7:145826/1‑118 (MQ=255) cGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATc < 8:145826/118‑1 (MQ=255) gAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGCCTGCACAACAt < 6:272971/149‑1 (MQ=255) gtGGTCGAGGTGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGAc < 8:343772/131‑1 (MQ=255) gaaacgagggTCAGCAAGCTGAACCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCAc < 3:73392/142‑1 (MQ=255) tCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGc < 8:206983/124‑1 (MQ=255) tCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGc > 7:206983/1‑124 (MQ=255) gATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCt > 6:109590/1‑149 (MQ=255) gATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCt > 6:37001/1‑149 (MQ=255) atctgggTCAGCTTGCTGACCCCGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGCCt > 8:297766/5‑131 (MQ=255) atctgggTCAGCTTGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCt > 2:33001/5‑149 (MQ=255) gggTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGaa < 5:109590/149‑1 (MQ=255) gggTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGa < 2:348402/148‑1 (MQ=255) aGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCTCGTGATCCTGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCt < 2:267907/149‑1 (MQ=255) aGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCt > 8:59542/1‑149 (MQ=255) cAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCTGt > 4:132435/1‑149 (MQ=255) | CCAGCATCCTCGCCGACATGCACATGGACCATCAGAGCCTGATGGCGGCCATGCTGCACGATGTGATCGAAGACACCGGCATCGCCA‑‑AGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAATTGGTCGATGGGGTCAGCAAGCTGACCCAGATGAATTTCGAGACCAAGGCCGAGGCGCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCG‑ATATCCGCGTGATCCTGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCTGT > NC_002947/6049296‑6049589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |