| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,104,053 | T→A | 5.1% | intergenic (+31/‑83) | PP_5353 → / → PP_5354 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,104,053 | 0 | T | A | 5.1% | 357.3 / 4.3 | 115 | intergenic (+31/‑83) | PP_5353/PP_5354 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (50/58); new base A (3/3); total (53/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 115 total aligned reads displayed.
TCGAAGAATTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTGGAGCTTCC > NC_002947/6103909‑6104200 | tCGAAGAATTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGcc > 7:308365/1‑149 (MQ=255) cGAAGAATTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGccc > 5:424659/1‑149 (MQ=255) gaagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACAGTGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGccc > 1:326673/1‑149 (MQ=255) gaagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCg < 6:61568/149‑1 (MQ=255) gaagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCg > 1:227606/1‑149 (MQ=255) gaagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCg > 7:180112/1‑149 (MQ=255) agaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCCTAATTGGCTGGTAGCCGGTATCCGTCAAAACTGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGccc < 1:353318/149‑1 (MQ=255) agaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCggg < 6:371194/149‑1 (MQ=255) aTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑GTGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCAAGCCCGGGGtt < 7:308615/149‑1 (MQ=255) ttCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGttt < 6:388594/149‑1 (MQ=255) ttCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGttt < 6:201395/149‑1 (MQ=255) ttCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGttt > 8:360809/1‑149 (MQ=255) ttCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGttt > 7:330457/1‑149 (MQ=255) ttCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGttt < 1:111237/149‑1 (MQ=255) ttCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGttt > 5:398659/1‑149 (MQ=255) gcgcTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTttttg > 8:377407/1‑149 (MQ=255) gcTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTttttgct > 6:113457/1‑149 (MQ=255) cTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTttttgctt > 4:346907/1‑149 (MQ=255) cTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTttttgctt > 1:339740/1‑149 (MQ=255) cGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTttttgctttt < 3:300393/148‑1 (MQ=255) gACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTttttgcttttgc < 7:167707/149‑1 (MQ=255) gACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTttttgcttttg < 2:236036/148‑1 (MQ=255) cGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTgg < 6:424659/149‑1 (MQ=255) cGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCGGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTACACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTg > 6:330445/1‑148 (MQ=255) aaGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCGAAAGTGGGc > 6:62700/1‑149 (MQ=255) ttCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGctac > 4:79953/1‑147 (MQ=255) ttCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCAAGCCCGGGGttctgtgt > 6:155924/1‑123 (MQ=255) ttCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCAAGCCCGGGGttctgtgt < 5:155924/129‑7 (MQ=255) cAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCTGTATCCGTCAAAATTTTTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAg < 1:354739/148‑1 (MQ=255) aGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAgg < 3:116347/148‑1 (MQ=255) aGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAgg < 1:239357/148‑1 (MQ=255) aaaGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGtata < 7:132633/149‑1 (MQ=255) cTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGgc < 5:113457/149‑1 (MQ=255) gCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGgc < 5:37225/146‑1 (MQ=255) aca‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGc > 5:233320/1‑149 (MQ=255) a‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGt > 7:45066/1‑149 (MQ=255) tGGTTCTCGCCTTGGGCGCGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGtt > 3:260553/1‑149 (MQ=255) tGGTTCTCGCCTTGGGCGCGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGtt > 1:13278/1‑149 (MQ=255) tGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGTGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGtt < 1:356753/149‑1 (MQ=255) tGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGtt < 6:241868/149‑1 (MQ=255) ggTTCTCGCCTTGGGCGCGAACCAGCC‑‑‑TTGGCTGGTAGCCGGAATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTg > 4:153501/1‑149 (MQ=255) gTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGt > 6:147460/1‑149 (MQ=255) tCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCa > 1:394362/1‑149 (MQ=255) cgcgCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGtat > 8:338408/1‑131 (MQ=255) cgcgCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGtat < 7:338408/131‑1 (MQ=255) gcgcCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATc < 7:49431/149‑1 (MQ=255) gcCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATc > 8:187883/1‑147 (MQ=255) ccAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAgg > 1:127928/1‑149 (MQ=255) aaGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGt > 3:255722/1‑148 (MQ=255) ccAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGt > 4:272048/1‑148 (MQ=255) cAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTATGGTATAAGGCGCAGCGGTGTCATCTAGTTCAGAGGAAGTg > 3:68684/1‑148 (MQ=255) cAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGa < 2:206222/149‑1 (MQ=255) gCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAAc > 7:150852/1‑149 (MQ=255) cc‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAAcc < 6:355008/149‑1 (MQ=255) gTAGCCGTTATCCGTGAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTATGCCAAAGTGGGCTACTAGGGTATAATGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGgaagaa < 6:430998/149‑1 (MQ=255) gTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGgaagaa < 3:248500/149‑1 (MQ=255) gTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGgaaga < 8:45066/148‑1 (MQ=255) tAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGaagaag < 1:352685/149‑1 (MQ=255) ccGGTATCCGTCAAAACATCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGa < 7:190653/149‑1 (MQ=255) cGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGAt < 8:180112/149‑1 (MQ=255) cGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGAt > 4:409427/1‑149 (MQ=255) ggTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATc > 1:177798/1‑149 (MQ=255) gTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGaagaag < 7:142359/143‑1 (MQ=255) gTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGaagaag > 8:142359/1‑143 (MQ=255) tCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaac < 8:255857/149‑1 (MQ=255) tCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaa < 7:360809/148‑1 (MQ=255) tCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaa < 4:255722/148‑1 (MQ=255) gTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaacaac < 3:79953/149‑1 (MQ=255) gTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaacaac > 5:238306/1‑149 (MQ=255) gTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaacaa > 5:11915/1‑148 (MQ=255) aaaaCAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTcc < 7:187883/149‑1 (MQ=255) aaCAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGt > 8:70694/1‑149 (MQ=255) aaCAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGt > 1:244469/1‑149 (MQ=255) aGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGaa < 8:330457/149‑1 (MQ=255) gCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAg < 5:147460/149‑1 (MQ=255) cTAATCGCTGCGAGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCCGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGAGAAGc > 6:100709/1‑149 (MQ=255) aTCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGaa < 3:272048/149‑1 (MQ=255) tCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAAt < 2:244469/149‑1 (MQ=255) gCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGa < 2:339740/149‑1 (MQ=255) gCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGcc < 4:260553/149‑1 (MQ=255) cGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGcc < 6:121284/148‑1 (MQ=255) cGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCg < 2:88819/149‑1 (MQ=255) gTGCTAAACACAGAACCCCGGGCTTGCTCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCgg < 7:196375/149‑1 (MQ=255) cTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTAc > 4:40414/1‑149 (MQ=255) tAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGATCCGTGGaagaag < 6:99751/112‑1 (MQ=255) tAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGaagaag > 5:99751/1‑112 (MQ=255) aaaCACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCag > 5:211132/1‑89 (MQ=255) aaaCACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCag < 6:211132/89‑1 (MQ=255) aaCACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCgg > 6:139284/1‑149 (MQ=255) acacAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGt < 7:98757/149‑1 (MQ=255) acaGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGc < 7:70694/149‑1 (MQ=255) caGAACCCCGGGCGTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGcc < 8:302533/149‑1 (MQ=255) aaaaaCCCCGGGCAAGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAGGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGcc > 6:146507/4‑149 (MQ=255) aaCCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCt < 6:238306/149‑1 (MQ=255) aCCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTTGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTg < 6:233320/149‑1 (MQ=255) ccccGGGCAAGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCTCTgg < 5:123691/149‑1 (MQ=255) ccccGGGCAAGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCTCTg > 6:123691/1‑148 (MQ=255) cccGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGaa < 2:263606/88‑1 (MQ=255) cccGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTGGa < 5:229630/149‑1 (MQ=255) cccGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTGGa < 2:127928/149‑1 (MQ=255) | TCGAAGAATTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACA‑TGGTTCGCGCCCAAGGCGAGAACCAGCC‑‑‑TTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTTTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTGGAGCTTCC > NC_002947/6103909‑6104200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |