| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,166,474 | C→A | 5.2% | intergenic (‑233/‑447) | PP_5406 ← / → PP_5407 | transposase/TnsD‑like transposition protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,166,474 | 0 | C | A | 5.2% | 333.6 / 3.8 | 103 | intergenic (‑233/‑447) | PP_5406/PP_5407 | transposase/TnsD‑like transposition protein |
| Reads supporting (aligned to +/- strand): ref base C (53/44); new base A (2/4); total (55/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
Only 100 of 105 total aligned reads displayed.
GGGCAGGTAACCGCGTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTTCTCTCAGGCTTCGCTGACGCAG > NC_002947/6166326‑6166621 | gggCAGGTAACCGCGTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGc < 1:102892/149‑1 (MQ=255)gggCAGGTAACCGCGTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGc < 1:96920/149‑1 (MQ=255) gTAACCGCGTTTCCGGTTGTGGATAACGCGGAGATTGTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTgg > 2:317789/1‑149 (MQ=255) gTAACCGCGTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTgg > 4:243579/1‑149 (MQ=255) gTAACCGCGTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTgg < 1:69836/149‑1 (MQ=255) gTAACCGCGTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGAGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTgg > 3:270803/1‑149 (MQ=255) tAACCGCGTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATGGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAAGGCCCAA‑GTGCGACCTTggg < 2:99134/149‑1 (MQ=255) aCCGCGTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGcc < 6:339195/149‑1 (MQ=255) aCCGCGTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGc < 4:176249/148‑1 (MQ=255) ccGCGTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTCCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GTGCGACCTTGGGccc < 1:356076/149‑2 (MQ=255) cgcgTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCtt > 3:57266/1‑149 (MQ=255) cgcgTTTCCGGTTGGGGAAAACTCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GTGCGACCTTGGGccct < 5:68823/149‑3 (MQ=255) gcgTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCttt < 5:103734/149‑1 (MQ=255) gcgTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCttt < 5:73051/149‑1 (MQ=255) cgTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATTCACAAGGGCCCAA‑GTGCGACCTTGGGCCCTTg < 1:51414/149‑1 (MQ=255) gTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGt > 1:4177/1‑149 (MQ=255) cGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATc < 1:317789/149‑1 (MQ=255) tgGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGAttt < 5:185613/149‑1 (MQ=255) gATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTc > 8:248454/1‑148 (MQ=255) aTAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCa < 1:174221/149‑1 (MQ=255) cgcgGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAgcgc > 5:265140/1‑149 (MQ=255) gcgGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAgcgc > 6:373464/1‑148 (MQ=255) gcgGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGct < 7:84133/149‑1 (MQ=255) gcgGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGct > 1:433405/1‑149 (MQ=255) aTTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGtt < 5:279367/149‑1 (MQ=255) cTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTtag > 8:123112/1‑149 (MQ=255) cTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTta < 2:433728/148‑1 (MQ=255) ggATGACCGAATCCGTGCGAAACTTGCCGTTTCACATGCAAGGGATAGACAATGGAGGAGTCACGTGCCTTTTCTGACTTATCCACAAGGGCACAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTtagctagc > 7:269662/1‑149 (MQ=255) gATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTagctagct < 2:71907/149‑1 (MQ=255) gCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGTCCAAA‑GGTCGCACTTGGGCCATTGTCTATCTGATTTCCAGCGCTGTCGTTTAGCTAGCTgtcgt > 3:300390/1‑149 (MQ=255) gAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCt < 3:243579/149‑1 (MQ=255) tCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGaa < 2:423549/149‑1 (MQ=255) ccGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAAt > 5:118471/1‑149 (MQ=255) gTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAAttt < 7:340265/149‑1 (MQ=255) cGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAAtttct < 2:4177/148‑1 (MQ=255) cGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCATTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAAtttctt > 2:155686/1‑149 (MQ=255) gAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAAtttcttt > 6:82321/1‑149 (MQ=255) gAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAAtttcttt > 4:215201/1‑149 (MQ=255) gAAACTTGACGTTTCACATGCAAGGGATAGACAATGGACGAGTCAGGTGCCTTTACTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCTTCTGAAtttcttt > 3:205839/1‑149 (MQ=255) cTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGt > 1:169036/1‑148 (MQ=255) aCGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGt < 2:433405/149‑1 (MQ=255) gTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTGGCTGTCGTCTGAATTTCTTTCGTTAGGTc > 5:166713/1‑148 (MQ=255) tttCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTa > 7:313598/1‑149 (MQ=255) tttCACATGCAAGGGATAGACAATGGAGGAGTCAAGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCt > 1:279534/1‑148 (MQ=255) tCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTAc < 3:405750/148‑1 (MQ=255) cacaTGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTAcc < 4:57266/148‑1 (MQ=255) cacaTGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTAcc < 1:362614/148‑1 (MQ=255) cacaTGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCACTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTAcc < 6:26916/148‑1 (MQ=255) acaTGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCt > 2:256426/1‑148 (MQ=255) aTGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAg < 2:279534/149‑1 (MQ=255) aTGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAg < 5:340864/149‑1 (MQ=255) tGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAgg > 7:349167/1‑149 (MQ=255) tGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAg < 8:313598/148‑1 (MQ=255) cAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGc > 4:28393/1‑148 (MQ=255) cAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGc < 3:28393/148‑1 (MQ=255) cAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCg > 6:425703/1‑149 (MQ=255) cAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCg > 3:125367/1‑149 (MQ=255) gggATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAgg < 2:27520/133‑1 (MQ=255) gggATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAgg > 1:27520/1‑133 (MQ=255) gATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTcc < 7:354686/149‑1 (MQ=255) gACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAAGGGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTccgcc > 1:326814/1‑149 (MQ=255) aCAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGc > 5:333703/1‑138 (MQ=255) aCAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGa > 6:158192/1‑149 (MQ=255) ggaggaGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATtgt > 1:133417/1‑148 (MQ=255) tCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATGTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTAGTCTGAATTTGTTTCGTTAGGTCTACCTTAGGCGTCTCCTCCGATTGTGATCTTGc > 6:404448/1‑149 (MQ=255) gTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCAc > 4:194985/1‑149 (MQ=255) gTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGAGTTCCAGCGCTCGCGGTTAGCTAGCTGTCGGCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGAGTGTGAGATTGCCCAc > 2:201300/1‑149 (MQ=255) ccTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGc < 3:215201/148‑1 (MQ=255) cTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCt > 3:27767/1‑148 (MQ=255) cTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTc < 5:82321/149‑1 (MQ=255) ttttCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCa > 3:333194/1‑149 (MQ=255) ttttCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCa > 4:123973/1‑149 (MQ=255) tttCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCAc > 2:320833/1‑149 (MQ=255) aCTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGcc < 7:123112/148‑1 (MQ=255) aCTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGc < 6:397718/147‑1 (MQ=255) ttATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCtt > 3:187786/1‑149 (MQ=255) ttATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCtt < 4:125367/149‑1 (MQ=255) tCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTtctc > 2:372146/1‑149 (MQ=255) cacaAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTtctct < 6:118471/148‑1 (MQ=255) ccaAGTGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTTCTCTCa < 4:18824/148‑1 (MQ=255) ccaAGGGCCCAC‑GGGCGCACTTGGGCCTTTGTCAATCTGACTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTCCCCACGCTCACGAGCCCTTCTCTCa < 4:12899/148‑1 (MQ=255) acaAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTtctct > 3:147955/1‑147 (MQ=255) acaAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTtctct > 8:354480/1‑147 (MQ=255) acaAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTTCTCTCa < 4:255588/149‑1 (MQ=255) caAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGGCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTTCTCTCAg < 3:409220/149‑1 (MQ=255) aaaggCCCAA‑GTGCGACCTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTTCTCTCAgg > 7:290128/4‑149 (MQ=255) aaGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTTCTCTCa < 1:155686/147‑1 (MQ=255) aaGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTTCTCTCAgg > 1:150004/1‑149 (MQ=255) gggCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAg > 4:27990/1‑96 (MQ=255) gggCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAg < 3:27990/96‑1 (MQ=255) gggCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTTCTCTCAGGCt > 7:258581/1‑149 (MQ=255) ggCCCAA‑GTGCGACCTTGGGCCCTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCGCTTCTCTCAGGCtt > 8:212903/1‑149 (MQ=255) ggCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTTCTCTCAGGCt > 6:263662/1‑148 (MQ=255) cccAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTTCTCTCAGGCTTCg > 3:211322/1‑149 (MQ=255) cAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTTCTCTCAGGCTTCGCt > 3:415432/1‑149 (MQ=255) aaa‑GGTCGCACTTGGGCGTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTTCCCAAGATAACGATCCAATCTCTCAGCCTTCGCt > 5:131633/2‑149 (MQ=255) tCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTTCTCTCAGGCTTCGCTGACGc < 5:158192/149‑1 (MQ=255) tCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCAGATTGTGATCTTGCCCACGCTCACGAGCCCTTCTCTCAGGCTTCGCTGACg > 3:361886/1‑148 (MQ=255) gCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCTCCGATTGTGATCTTGCCCCCGCTCACGAGCCCTTCTCTCAGGCTTCGCTGACGCAg > 1:380469/1‑149 (MQ=255) gCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTTCTCTCAGGCTTCGCTGACGCa < 2:133417/148‑1 (MQ=255) | GGGCAGGTAACCGCGTTTCCGGTTGTGGATAACGCGGAGATTCTTGTGGATGAGCGAATCCGTGCGAAACTTGACGTTTCACATGCAAGGGATAGACAATGGAGGAGTCAGGTGCCTTTTCTGACTTATCCACAAGGGCCCAA‑GGTCGCACTTGGGCCTTTGTCTATCTGATTTCCAGCGCTCTCGTTTAGCTAGCTGTCGTCTGAATTTCTTTCGTTAGGTCTACCTTAGGCGTCTCCGCCGATTGTGATCTTGCCCACGCTCACGAGCCCTTCTCTCAGGCTTCGCTGACGCAG > NC_002947/6166326‑6166621 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |