| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 538,397 | A→G | 6.1% | I259V (ATC→GTC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 538,397 | 0 | A | G | 6.1% | 285.2 / 6.6 | 98 | I259V (ATC→GTC) | rpoB | DNA‑directed RNA polymerase subunit beta |
| Reads supporting (aligned to +/- strand): ref base A (49/43); new base G (2/4); total (51/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.23e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.98e-01 | |||||||||||
GCCTCGGTGCTGCTGCGCGCCCTGGGTTACAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTACCGCCAAGGCTATCGT > NC_002947/538250‑538542 | gCCTCGGTGCTGCTGCGCGCCCTGGGTTACAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACAt > 4:405025/1‑149 (MQ=255) tgctgctgcGCGCCCTGGGTTACAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGAc > 5:47526/1‑149 (MQ=255) ctgctgcGCGCCCTGGGTTACAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGa < 4:207119/149‑1 (MQ=255) gctgcGCGCCCTGGGTTACAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGATGTCCATGActgca < 4:305506/149‑5 (MQ=255) ctgcGCGCCCTGGGTTACAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGATGTCCATGActgc < 5:2922/147‑4 (MQ=255) ctgcGCGCCCTGGGTTACAGCACTGAAGAAGTGCTGAACACCTTCTACACCACAAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAAc > 3:379876/1‑149 (MQ=255) cgcgcCCTGGGTTACAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCgg > 8:323398/1‑149 (MQ=255) cgcgcCCTGGGTTACAGCACTGAAGAAGTGCTGAACACCTTCTACACCACAAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAAcc < 4:379876/147‑1 (MQ=255) cccTGGGTTACAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCaaa < 4:60023/149‑1 (MQ=255) cccTGGGTTACAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCaaa < 3:416311/149‑1 (MQ=255) ccTGGGTTACAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAg < 1:54093/149‑1 (MQ=255) ggTTACAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCa < 6:365884/148‑1 (MQ=255) gTTACAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCAtc < 5:3854/149‑1 (MQ=255) cAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCAtcgtcg < 6:418994/149‑1 (MQ=255) cAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCAtcgtc < 7:175352/148‑1 (MQ=255) cAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCAtcgtc < 6:94568/148‑1 (MQ=255) cACTGAAGAAGTGTTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAg > 1:157313/1‑148 (MQ=255) aCTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTACAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGc > 8:399098/1‑148 (MQ=255) cTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGCCGACACCGGCAAAGTCATCGTGGAGc > 4:342203/1‑147 (MQ=255) cTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGc > 4:17569/1‑147 (MQ=255) gaagTGCTGAACACCTTCTACACAACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGgccg > 4:354378/1‑149 (MQ=255) aagTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGATGTCCATGActgc < 5:359185/119‑4 (MQ=255) aagTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGATGTCCATGActgc > 6:359185/1‑116 (MQ=255) gTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGccgccg > 2:225091/1‑149 (MQ=255) tGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAAc > 7:210797/1‑118 (MQ=255) tGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAAc < 8:210797/118‑1 (MQ=255) gCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGa < 4:368762/111‑1 (MQ=255) gCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGa > 3:368762/1‑111 (MQ=255) cTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTAt < 3:239193/149‑1 (MQ=255) cTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTAt > 6:146513/1‑149 (MQ=255) aaCACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTAc > 8:202517/1‑149 (MQ=255) cacCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTa > 2:112963/1‑146 (MQ=255) cacCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTa < 1:112963/146‑1 (MQ=255) acCTTCTACACCACCAACGTGTTCCACATTTCCGTCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCAGCCGTATTACcgc > 5:62607/1‑149 (MQ=255) cTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACcgcgc > 6:311711/1‑149 (MQ=255) cTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACcgcgc > 3:300605/1‑149 (MQ=255) cTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCgcgcgc > 7:111146/1‑148 (MQ=255) cTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCgcgcgc < 5:311711/148‑1 (MQ=255) cTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCgcgcgc < 7:84199/148‑1 (MQ=255) cTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCgcgcgc < 4:300605/148‑1 (MQ=255) accaccAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACAt > 7:70903/1‑149 (MQ=255) caccaACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCgcgcgc < 6:322536/142‑1 (MQ=255) caccaACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCgcgcgc > 5:322536/1‑142 (MQ=255) caccaACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATc > 8:332172/1‑148 (MQ=255) ccaACGTGTTCCACATTTCCGGCGTAAAACTCAGCCTGTAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAAc < 6:62607/149‑1 (MQ=255) caACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAAcc < 8:111146/149‑1 (MQ=255) caACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAAc > 6:135470/1‑148 (MQ=255) ttCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGa > 6:345740/1‑107 (MQ=255) ccACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAATGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCgag > 8:74054/1‑148 (MQ=255) ccACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCgag > 3:97147/1‑148 (MQ=255) ccACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCgag > 6:218965/1‑148 (MQ=255) cacaTTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTa > 2:151365/1‑121 (MQ=255) cacaTTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGaa < 5:135470/149‑1 (MQ=255) aTTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACcgc < 2:152662/122‑1 (MQ=255) aTTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACcgc > 1:152662/1‑122 (MQ=255) tCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCg < 8:294875/148‑1 (MQ=255) tCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGGCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCg < 4:158342/148‑1 (MQ=255) cGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGc < 5:105767/148‑1 (MQ=255) gAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCaa < 7:326222/149‑1 (MQ=255) gAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCaa < 7:323398/149‑1 (MQ=255) aaaaaCTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAg > 3:175874/1‑149 (MQ=255) aCTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGAAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAAc > 7:288775/1‑149 (MQ=255) ccTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACg > 3:60978/1‑149 (MQ=255) cTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGt < 3:354378/149‑1 (MQ=255) cTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACAAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGt > 7:155322/1‑149 (MQ=255) gAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAATGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTc < 7:74054/148‑1 (MQ=255) gAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTc < 3:342203/148‑1 (MQ=255) tACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGaa < 8:155322/149‑1 (MQ=255) tACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGaa < 6:47526/149‑1 (MQ=255) tACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGaa < 7:347571/149‑1 (MQ=255) ccGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATa < 4:97147/149‑1 (MQ=255) cGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATAc > 6:2974/1‑149 (MQ=255) cGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATAc < 7:332172/149‑1 (MQ=255) gCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACg > 4:312354/1‑149 (MQ=255) tGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCCCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGc > 4:331180/1‑149 (MQ=255) gCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGcc > 8:305349/1‑149 (MQ=255) cGTGGTGAAGTTGCAGTCATGGACATCCATGACTAAACCGGCAAAGTCAtcg < 3:23178/52‑1 (MQ=255) cGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCAtcg > 4:23178/1‑52 (MQ=255) cGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCg < 8:70903/149‑1 (MQ=255) gAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTAc > 2:137806/1‑149 (MQ=255) aaGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTAcc > 8:122911/1‑149 (MQ=255) aaGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTAcc > 6:116858/1‑149 (MQ=255) aGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCTCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTACCg < 5:116858/149‑1 (MQ=255) gTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTACCGc > 4:41121/1‑149 (MQ=255) gCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTACCGcc > 2:345899/1‑147 (MQ=255) cAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGGCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTACCGCCAAg < 3:17569/149‑1 (MQ=255) aGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCTTAATAACCCGCGCCACATAAACCAGCTCGAGAACGCCGGCGTCAAGCAACTGGACGTTACAATGGAAAACGTCCTGGGCCCCACTAACGCCAAgg > 1:115049/1‑149 (MQ=255) aGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGCATACGTCCTGGGCCGCACTACCGCCAAgg < 1:32981/149‑1 (MQ=255) aGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTACCGCCAAgg > 2:397722/1‑149 (MQ=255) gTCATGGATGTCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCa > 8:118928/1‑136 (MQ=255) gTCATGGATGTCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCa < 7:118928/136‑1 (MQ=255) gTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTACCGCCAAGGc < 5:2974/149‑1 (MQ=255) tCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTACCGCCAAGGc > 7:168388/1‑148 (MQ=255) tCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTACCGCCAAGGc > 5:192983/1‑148 (MQ=255) aTGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTACCGCCAAGGCTAt > 3:326949/1‑149 (MQ=255) ggACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTACCGCCAAGGCTATCg > 3:358640/1‑149 (MQ=255) gACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGTCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTACCGCCAAGGCTATCg < 5:146513/148‑1 (MQ=255) gACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTACCGCCAAGGCTATCGt < 3:312354/149‑1 (MQ=255) aTCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTc < 4:167886/103‑1 (MQ=255) aTCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTc > 3:167886/1‑103 (MQ=255) | GCCTCGGTGCTGCTGCGCGCCCTGGGTTACAGCACTGAAGAAGTGCTGAACACCTTCTACACCACCAACGTGTTCCACATTTCCGGCGAAAAACTCAGCCTGGAACTGGTACCGCAGCGTCTGCGTGGTGAAGTTGCAGTCATGGACATCCATGACGAAACCGGCAAAGTCATCGTCGAGCAAGGCCGCCGTATTACCGCGCGCCACATCAACCAGCTCGAGAAGGCCGGCGTCAAGCAACTGGACGTTCCAATGGAATACGTCCTGGGCCGCACTACCGCCAAGGCTATCGT > NC_002947/538250‑538542 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |