Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 103,820 T→A 7.8% intergenic (+118/‑22) PP_0098 → / → PP_0099 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947103,8200TA 7.8% 253.3 / 9.5 90intergenic (+118/‑22)PP_0098/PP_0099hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (41/42);  new base A (3/4);  total (44/46)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.29e-01

GTTGTTTGGTGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAGGGTAC  >  NC_002947/103675‑103966
                                                                                                                                                 |                                                                                                                                                  
gttgttTGGTGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTaa                                                                                                                                                  >  6:440650/1‑148 (MQ=255)
     ttGGTGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAg                                                                                                                                             >  5:231920/1‑148 (MQ=255)
       ggTGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTa                                                                                                                                           <  3:340564/148‑1 (MQ=255)
       ggTGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTa                                                                                                                                           <  3:334787/148‑1 (MQ=255)
       ggTGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTAt                                                                                                                                          >  8:198482/1‑149 (MQ=255)
        gTGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGTGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATTAAAATACAGTAtc                                                                                                                                         <  5:228525/149‑2 (MQ=255)
        gTGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTAt                                                                                                                                          >  8:51499/1‑148 (MQ=255)
        gTGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATCGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATTAATATACAGTAtc                                                                                                                                         <  4:367278/149‑2 (MQ=255)
          gCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATTAATATACAGTAtcgt                                                                                                                                       >  3:237850/1‑146 (MQ=255)
           cAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATTAATATACAGTAtcgtg                                                                                                                                      <  4:237850/149‑5 (MQ=255)
           cAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAg                                                                                                                                      <  3:147396/149‑1 (MQ=255)
            aGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATTAATATACAGTAtcgtg                                                                                                                                      <  4:103201/148‑5 (MQ=255)
            aGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATTAATATACAGTAtcgtg                                                                                                                                      >  3:103201/1‑144 (MQ=255)
              tgctgcAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGt                                                                                                                                    >  4:119086/1‑148 (MQ=255)
                ctgcAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAg                                                                                                                                 >  5:12279/1‑149 (MQ=255)
                   cAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCa                                                                                                                              >  8:162573/1‑149 (MQ=255)
                             cgcTGTCTGTCTGGGATGGGCGGCAAGCGAGCCAGGCAGCGTATGTGCGCGGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGGGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATtcctcc                                                                                                                    <  2:74699/149‑1 (MQ=255)
                                tgtctgtcTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAg                                                                                                                  >  7:305596/1‑148 (MQ=255)
                                    tgtctgGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCg                                                                                                             <  4:279345/149‑1 (MQ=255)
                                        tgGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCGCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCaa                                                                                                          >  2:289352/1‑148 (MQ=255)
                                        tgGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCaa                                                                                                          >  4:368317/1‑148 (MQ=255)
                                          ggATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAg                                                                                                       <  3:112161/149‑1 (MQ=255)
                                          ggATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAg                                                                                                       <  3:106149/149‑1 (MQ=255)
                                            aTGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAggg                                                                                                     <  5:65476/149‑1 (MQ=255)
                                            aTGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAggg                                                                                                     <  5:413018/149‑1 (MQ=255)
                                            aTGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAggg                                                                                                     >  5:139701/1‑149 (MQ=255)
                                            aTGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAggg                                                                                                     <  4:95062/149‑1 (MQ=255)
                                             tGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGc                                                                                                    >  6:220018/1‑149 (MQ=255)
                                               ggcggcAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGcc                                                                                                   <  3:322893/148‑1 (MQ=255)
                                                gcgtcAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTAAGACCAGAGGTTCTGGTAAGATCCCGGTGTGCACGATACTTTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGt                                                                                                 <  8:348190/149‑1 (MQ=255)
                                                gcggcAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGt                                                                                                 >  3:126304/1‑149 (MQ=255)
                                                gcggcAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGt                                                                                                 <  7:51499/149‑1 (MQ=255)
                                                 cggcAATCGAGCCAGGCAGGGTATGTGCTCTGGCATGGCCTGATTTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTg                                                                                                <  7:180287/149‑1 (MQ=255)
                                                    cAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCa                                                                                             >  5:114689/1‑149 (MQ=255)
                                                         gAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGgc                                                                                         <  6:12279/148‑1 (MQ=255)
                                                          aGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGgcg                                                                                        >  8:223879/1‑148 (MQ=255)
                                                           gCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGca                                                                                      >  7:107329/1‑149 (MQ=255)
                                                            ccAGGCAGCGTATGTGCGCTGGCATGGCGTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGca                                                                                      >  1:243511/1‑148 (MQ=255)
                                                            ccAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGca                                                                                      >  8:226817/1‑148 (MQ=255)
                                                               ggCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAAt                                                                                  >  3:292291/1‑149 (MQ=255)
                                                                gCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATc                                                                                 <  3:232530/149‑1 (MQ=255)
                                                                gCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATc                                                                                 <  1:328633/149‑1 (MQ=255)
                                                                gCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATc                                                                                 <  3:119086/149‑1 (MQ=255)
                                                                gCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATc                                                                                 <  3:368317/149‑1 (MQ=255)
                                                                          tgCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAAcc                                                                        <  7:198482/148‑1 (MQ=255)
                                                                               tGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTg                                                                  >  4:63235/1‑149 (MQ=255)
                                                                                ggCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGc                                                                 <  4:292291/149‑1 (MQ=255)
                                                                                 gCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGcc                                                                <  4:126304/149‑1 (MQ=255)
                                                                                   aTGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGcccc                                                              >  7:238441/1‑149 (MQ=255)
                                                                                    tGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCt                                                             <  6:231920/149‑1 (MQ=255)
                                                                                      gCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTgg                                                           >  6:426698/1‑149 (MQ=255)
                                                                                      gCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTgg                                                           <  8:305596/149‑1 (MQ=255)
                                                                                         tGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCa                                                        >  6:386697/1‑149 (MQ=255)
                                                                                                gtCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGt                                                  <  7:223879/148‑1 (MQ=255)
                                                                                                gtCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGt                                                  <  8:238441/148‑1 (MQ=255)
                                                                                                 tCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTAGCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAAACGCTTTGCCCCTGGTCATTAGGTgg                                                >  5:421413/1‑149 (MQ=255)
                                                                                                 tCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTgg                                                >  4:51034/1‑149 (MQ=255)
                                                                                                   aGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCg                                              >  3:22494/1‑149 (MQ=255)
                                                                                                   aGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCg                                              >  3:16648/1‑149 (MQ=255)
                                                                                                     aCCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGt                                                  <  6:422246/143‑1 (MQ=255)
                                                                                                     aCCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGt                                                  >  5:422246/1‑143 (MQ=255)
                                                                                                     aCCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCgg                                             >  5:4349/1‑148 (MQ=255)
                                                                                                      ccAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGaa                                           <  6:114689/149‑1 (MQ=255)
                                                                                                       cAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAg                                          <  3:63235/149‑1 (MQ=255)
                                                                                                         gagGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAgat                                        >  2:224090/1‑149 (MQ=255)
                                                                                                          agGTGCTGGTAACATCCCGGTGTGCACGATACTGTATATTAATACGGTATAAAGGTGAGCCATGATACAACCAGTACCGCAAAAGGGCCGGGGCACGGCGACCAATCCACACAACAGGTTTGCCACTGGGCATGCGGTGGGGGAAgat                                        >  6:309926/1‑148 (MQ=255)
                                                                                                            gTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAgatgat                                     >  8:297810/1‑149 (MQ=255)
                                                                                                             tGCTGGTAAGATCCCTGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGatgatg                                    <  8:90532/149‑1 (MQ=255)
                                                                                                                tGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCt                                 >  1:214386/1‑149 (MQ=255)
                                                                                                                  gTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTgg                               >  3:302923/1‑149 (MQ=255)
                                                                                                                  gTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTg                                <  7:162573/148‑1 (MQ=255)
                                                                                                                  gTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTg                                <  7:226817/148‑1 (MQ=255)
                                                                                                                   tAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGt                              <  6:139701/149‑1 (MQ=255)
                                                                                                                            ggTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCTGAAGATGATGGCTGGTACCAGGAAg                     <  5:220018/149‑1 (MQ=255)
                                                                                                                            ggTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAg                     >  2:304324/1‑149 (MQ=255)
                                                                                                                              tgtgCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTg                   <  7:297810/149‑1 (MQ=255)
                                                                                                                                tgCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGCTGGCGGAAGATGATGGCTGGTACCAGGAAGTGcc                 <  1:289352/149‑1 (MQ=255)
                                                                                                                                  ctgaaTACTGTATTAATATACAGTATTCAGCTGAGCCATCATTCCTCCACTACCGCAAAAGGGCCGTGCCAAGGCGCACAATCCACACAACCGCTTTGCCCCTGTTCATTCGCTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCg                >  2:298446/5‑148 (MQ=255)
                                                                                                                                  cACGATACTGTATATTAGTACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCg                <  2:37049/148‑1 (MQ=255)
                                                                                                                                  cACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGcag                >  8:174929/1‑146 (MQ=255)
                                                                                                                                  cACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCg                >  5:228298/1‑148 (MQ=255)
                                                                                                                                  cACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGc               <  3:51034/149‑1 (MQ=255)
                                                                                                                                          tGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAgg                        <  2:341727/132‑1 (MQ=255)
                                                                                                                                          tGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAgg                        >  1:341727/1‑132 (MQ=255)
                                                                                                                                          tGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAg       >  8:350651/1‑149 (MQ=255)
                                                                                                                                            tataTTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCaaa            <  3:54219/142‑1 (MQ=255)
                                                                                                                                            tataTTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCaaa            >  4:54219/1‑142 (MQ=255)
                                                                                                                                            tataTTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAgg      <  7:300913/148‑1 (MQ=255)
                                                                                                                                            tataTTAATACAGTATTCAGGTGAGCCACGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAgg      <  5:386697/148‑1 (MQ=255)
                                                                                                                                               atTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAGGGTAc  >  6:441410/1‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                                  
GTTGTTTGGTGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAGGGTAC  >  NC_002947/103675‑103966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: