| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 702,766 | C→A | 13.3% | intergenic (+14/‑118) | PP_23SD → / → PP_5SD | 23S ribosomal RNA/5S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 702,766 | 0 | C | A | 13.3% | 263.6 / 27.9 | 105 | intergenic (+14/‑118) | PP_23SD/PP_5SD | 23S ribosomal RNA/5S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (41/50); new base A (5/9); total (46/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.84e-01 | |||||||||||
Only 100 of 105 total aligned reads displayed.
ACTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGA > NC_002947/702627‑702908 | aCTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCGTAGCAGATTGc < 5:69230/149‑1 (MQ=2) tGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCgg > 8:262167/1‑149 (MQ=32) ggATCTTGAATCCCCTAAAGGGCCGTCGAAGTCTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCGTAGCAGATTGcttgg < 4:98327/149‑5 (MQ=11) ggATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCCCGCAATCTGCGTAGCAGATTGcttgg < 2:341211/149‑5 (MQ=11) ggATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCGTAGCAGATTGcttg < 8:322018/148‑4 (MQ=2) ggATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCGTAGCAGATTGctt < 7:385823/147‑3 (MQ=2) ggATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCGTAGCAGATTGctt < 5:96735/147‑3 (MQ=2) ggATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAACAATCTGCGTAGCAGATTGcttgg < 2:20460/149‑5 (MQ=11) ttGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCGTAGCAGATTGc < 8:14426/140‑1 (MQ=2) ttGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCGTAGCAGATTGc > 7:14426/1‑140 (MQ=2) gAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAg < 1:315676/148‑1 (MQ=32) gAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGa > 3:40751/1‑149 (MQ=32) aaTCCCCTAAAGGGCCGTCTAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCTGATTGCGGTGGTGAAGa < 4:321793/148‑1 (MQ=17) cccTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGaa < 6:318201/148‑1 (MQ=32) ccTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGa > 5:355794/1‑146 (MQ=32) ccTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGa > 2:407702/1‑146 (MQ=32) ccTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGa > 8:5446/1‑146 (MQ=32) ccTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGa > 2:14722/1‑146 (MQ=32) cTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGa < 6:355794/149‑1 (MQ=32) tAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑c > 6:67154/1‑149 (MQ=32) gTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAAtt > 3:58681/1‑149 (MQ=32) gTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAAtt > 3:423220/1‑149 (MQ=32) tctaataCTACGAAGTTTATAGGTTGTGTGGGTAAGCGCTGGGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGTCTTGACCATATAACAACCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTc < 2:328168/143‑1 (MQ=11) tCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTc < 4:58681/149‑1 (MQ=32) tCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTc < 4:423220/149‑1 (MQ=32) tCGAAGACTACGAAGTCGATAGGTTTGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATAAAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTc < 4:307180/149‑1 (MQ=255) gAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGt < 1:92155/149‑1 (MQ=32) gAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGt < 1:211130/149‑1 (MQ=32) gAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGt < 2:259228/149‑1 (MQ=32) tACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTa > 6:33649/1‑149 (MQ=32) cgacgTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTaca > 1:260295/1‑149 (MQ=32) cgacgTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTac < 1:349867/148‑1 (MQ=32) cgTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACaa < 1:14722/149‑1 (MQ=32) gTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTacac > 3:218715/1‑146 (MQ=32) tAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACAAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTa > 8:365469/1‑138 (MQ=17) tAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACAAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTa < 7:365469/138‑1 (MQ=17) ttGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑TCCGAAAATTCGTGCTTTACACAAGAGCTTCGc < 1:273273/148‑1 (MQ=17) ggTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTCCCCGTGAGGCTAGACCATATAACACCCAAGCAATCTCCTAAGCAGATTGCGGAGGTGAAGACGAAAGA‑AACGAAAATTAGTGCTTTACACAAAAGCTTCGCaaa > 6:180060/1‑148 (MQ=11) tgtgtAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAatat > 6:370421/1‑149 (MQ=32) tgtgtAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGATACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAatat > 2:240818/1‑149 (MQ=17) tgtAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGGCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATc < 5:372078/148‑1 (MQ=17) gtAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTTGCAAATATCg > 5:340342/1‑148 (MQ=17) aGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCt < 6:201470/133‑1 (MQ=32) aGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCt > 5:201470/1‑133 (MQ=32) gcgcTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGATGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACTAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCatat < 5:180060/149‑1 (MQ=17) gcgcTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCatat > 2:207929/1‑149 (MQ=32) cgcTGTGATGCGTTGAGCTAACCAATACTAATTGGCCGTGAGGCTTGACCATATAACTCGCAAGGATTCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAATTTCGTGCTTTACACAAGAGCTTCGCAAATATCGCatat < 8:255967/148‑1 (MQ=11) gcTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATcc < 6:360578/149‑1 (MQ=32) gcTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCGTAGCAGATTGctt < 4:297087/85‑3 (MQ=11) gcTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCGTAGCAGATTGctt > 3:297087/1‑83 (MQ=11) cTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGACCCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATcc < 1:314994/149‑1 (MQ=17) gCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGc > 6:381590/1‑149 (MQ=32) gCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGc < 6:27634/149‑1 (MQ=32) gAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTggg < 1:407702/148‑1 (MQ=32) gAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTggg < 5:370421/148‑1 (MQ=32) aGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTTGCAAATATCGCATATCCGAATTCGCTGGGc < 6:340342/148‑1 (MQ=17) aCCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGt < 4:218715/146‑1 (MQ=32) aCCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTc < 5:381590/147‑1 (MQ=32) ccAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGCGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTggg < 3:178113/141‑1 (MQ=17) ccAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGCGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTggg > 4:178113/1‑141 (MQ=17) cAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATc > 7:329486/1‑149 (MQ=32) cAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATc < 8:329486/149‑1 (MQ=32) aCTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGa > 7:258563/1‑149 (MQ=32) gCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTg > 8:325837/1‑149 (MQ=32) cccGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCg > 6:280586/1‑80 (MQ=34) cccGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCg < 5:280586/80‑1 (MQ=34) ccGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTgg > 7:106564/1‑148 (MQ=32) cGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGc > 2:418083/1‑148 (MQ=32) gTGAGGCTTGACCATATCACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCaa < 6:12053/149‑1 (MQ=17) gTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGC‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCaa < 5:227769/149‑1 (MQ=17) tGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCaa > 2:424912/1‑148 (MQ=32) gAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATc > 3:211492/1‑103 (MQ=32) ggCTTGACCATATAACACCCAAGCAATCTGCTACGCAGTTTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAg < 8:258563/148‑1 (MQ=17) gACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAAtt < 8:332599/147‑1 (MQ=32) aCCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCt > 5:147219/1‑149 (MQ=32) aCCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCt > 2:144421/1‑149 (MQ=32) ccATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCtt < 1:207929/149‑1 (MQ=32) ccATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCtt < 5:182114/149‑1 (MQ=32) cATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCtt > 2:35423/1‑148 (MQ=32) cATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCtt > 5:261442/1‑148 (MQ=32) atatAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTga < 1:35423/149‑1 (MQ=32) tataACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTgac < 7:325837/149‑1 (MQ=32) acCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTc < 3:108888/138‑1 (MQ=32) acCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTc > 4:108888/1‑138 (MQ=32) acCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCa > 7:299060/1‑148 (MQ=32) acCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCa > 8:167938/1‑148 (MQ=32) cccAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATa < 8:298192/149‑1 (MQ=32) ccAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCa > 5:283990/1‑146 (MQ=32) ccAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCa > 1:1550/1‑146 (MQ=32) ccAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCa > 8:185427/1‑146 (MQ=32) ccAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATag < 1:418083/149‑1 (MQ=32) caccacAATCTGCGTAGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCa > 4:182496/6‑146 (MQ=255) cAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAACAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATaga < 6:283990/149‑1 (MQ=17) aaGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATagag > 6:160745/1‑149 (MQ=32) cgCAATCTGCGTAGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCATGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCACTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATagag > 1:389323/2‑148 (MQ=11) cAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCAt < 8:106564/149‑1 (MQ=32) aaTCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCGAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCAtt < 7:5446/149‑1 (MQ=17) cTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGa < 3:97993/146‑1 (MQ=31) tACGCAGATTGCGGTGGTGAAGACGAAATA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATaga < 3:149530/137‑1 (MQ=11) tACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATaga > 4:149530/1‑137 (MQ=11) | ACTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGAAAGA‑CCCGAAAATTCGTGCTTTACACAAGAGCTTCGCAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGA > NC_002947/702627‑702908 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |