Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 152,158 | A→T | 11.3% | intergenic (‑52/+42) | PP_0143 ← / ← PP_0144 | membrane protein/insulinase family metalloprotease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 152,158 | 0 | A | T | 11.3% | 118.2 / 4.6 | 44 | intergenic (‑52/+42) | PP_0143/PP_0144 | membrane protein/insulinase family metalloprotease |
Reads supporting (aligned to +/- strand): ref base A (21/18); new base T (3/2); total (24/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCCGATACCGGAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGCAAGGCCATCAACCCGTA > NC_002947/152011‑152304 | gCCGATACCGGAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAg > 3:16816/1‑149 (MQ=255) ccGATACCGGAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCaa < 4:140222/147‑1 (MQ=255) gATACCGGAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTAGCTGGCTTGccc > 1:63073/1‑149 (MQ=255) cGGAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGaa < 4:16816/149‑1 (MQ=255) agagGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAgg < 4:131398/149‑1 (MQ=255) gcggACACCGCCTAGCGCTATGATCCCCGGGTAGCGCTTGAGTAGTTGCATTCTTCGCTGGACTACATGGGCGATTTGGGGCATTGGGGCCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCTTGCCCGCGaaga < 2:63073/145‑3 (MQ=255) gAAACCGCCGAGCGCAAGGATGCCCGGGTAGCGCTTGAGTTGTTCGCTGATGCGCTGCACGATCTGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCg < 2:286064/149‑1 (MQ=255) cataCCGCCGAGCGCAAGGCTGCCCGGGGAGCGTTTGAGTAGTTCGATGCGCCGAGGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCg < 6:325196/146‑1 (MQ=255) cgccgAGCGCAATGTTGCCCGGGTTGCGCTTGTGTTGTGCGATGATGCGCTGGACTATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTc < 8:411920/143‑1 (MQ=255) cgccgAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTc > 7:411920/1‑143 (MQ=255) cgccgAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACt > 5:393326/1‑149 (MQ=255) gcAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAg > 2:78937/1‑149 (MQ=255) gcAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAg < 8:281098/149‑1 (MQ=255) gcAATGATGCCCGGGTAGCGCGTGACTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAg < 6:257482/149‑1 (MQ=255) aGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTAc > 5:215966/1‑149 (MQ=255) gtTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCAAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGAAGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTa > 1:360345/1‑149 (MQ=255) cgcggTGGACGTTCTGGGCGAGTCGCGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTg < 6:221548/148‑1 (MQ=39) gcTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGc > 4:380362/1‑149 (MQ=255) gACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCCAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGCTACCGCC‑GATTTACCGCTGCCGTGAAGCACCACTGCGCCGtt > 8:366042/1‑149 (MQ=255) tatGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGt > 2:36210/1‑149 (MQ=255) ggggATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCAt > 2:169590/1‑149 (MQ=255) ggggAGTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAgg < 6:393326/144‑1 (MQ=255) ggggCTACGACATAAACGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCaa < 7:157749/148‑1 (MQ=255) gggCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGGACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCaa > 5:372045/1‑147 (MQ=255) aaGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTcc > 1:28384/1‑115 (MQ=255) aaGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTcc < 2:28384/115‑1 (MQ=255) aaGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAgg > 4:135893/1‑149 (MQ=255) aGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGc < 6:372045/149‑1 (MQ=255) ggCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGcccc < 6:215966/149‑1 (MQ=255) gCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCa > 7:412114/1‑149 (MQ=255) ccAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGa < 8:259695/146‑1 (MQ=255) ccAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGa > 7:259695/1‑146 (MQ=255) ccAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGc > 3:416109/1‑148 (MQ=255) ccAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGc < 3:60623/148‑1 (MQ=255) cAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGc > 3:329628/1‑147 (MQ=255) aGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGCAAg > 6:388562/1‑149 (MQ=255) tctTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGTGCCGTTCAGGTCCATGCCGCCGCCAGCGCAAc < 5:258887/112‑1 (MQ=255) tctTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAAc > 6:258887/1‑112 (MQ=255) tttCGCGGGCTTGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCAc > 3:410457/2‑137 (MQ=255) tttCGCGGGCTTGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCAc < 4:410457/136‑1 (MQ=255) tttCGCGGGCTTGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGCAAGGCCAt > 1:224248/2‑149 (MQ=255) ttCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGCAAGGCCAt > 6:258619/1‑148 (MQ=255) tCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCCTGATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCCCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGCAAGGCCAt > 1:101543/1‑148 (MQ=255) gCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGCAAGGCCATCAACCCGt < 5:388562/149‑1 (MQ=255) cAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGCAAGGCCATCAACCCGTa < 4:416109/149‑1 (MQ=255) | GCCGATACCGGAGAGGAAACCGCCGAGCGCAATGATGCCCGGGTAGCGCTTGAGTAGTTCGATGATGCGCTGGACGATATGGGGGATTTGGGGCATTGGGGGCTACGACAGAAAAGTGAGGTGGCTGTGCCAGCCTCTTCGCGGGCAAGCCCGCGAAAGGGTCGGTACTGGCAAAAGGATACCGCC‑GATTTACCGCTGCCGTGTAGCACCACTGGGCCGTTCAGGTCCATGCCGCCGCCAGCGCAACAGCCCCGCCGCCAGGCCCAGCCCCACGAGCAAGGCCATCAACCCGTA > NC_002947/152011‑152304 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |