| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 181,805 | T→C | 6.6% | intergenic (+19/‑87) | PP_r01 → / → PP_5SB | 5S ribosomal RNA/5S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 181,805 | 0 | T | C | 6.6% | 211.8 / 4.4 | 77 | intergenic (+19/‑87) | PP_r01/PP_5SB | 5S ribosomal RNA/5S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base T (40/31); new base C (3/2); total (44/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.66e-01 | |||||||||||
AGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAA > NC_002947/181662‑181950 | aGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGACGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTACCTGc‑a > 5:419317/1‑149 (MQ=11) gAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGc‑ac < 7:260339/149‑1 (MQ=31) aTTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACAt < 3:27595/149‑1 (MQ=32) aTTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTACCTGc‑atgc < 3:307045/149‑4 (MQ=11) tttCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACACAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATg > 1:321532/1‑149 (MQ=17) ccATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTACCTGC‑ATGTGCAGATAGGGGt < 2:126814/149‑1 (MQ=255) tAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGtttt < 8:390702/149‑1 (MQ=32) tAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGtttt < 2:321532/149‑1 (MQ=32) agCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGAAGGTAGGGTTTTTGTc > 4:40615/1‑149 (MQ=17) cATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCtt < 7:121090/149‑1 (MQ=32) taaCCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCt < 3:975/142‑1 (MQ=17) gAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCt > 4:975/1‑143 (MQ=32) atcccatcccGAACTCAGTATTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACa < 3:7375/149‑1 (MQ=38) tcccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACag < 3:72548/149‑1 (MQ=39) cccatcccGAACTCAGTAGTGCAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACa > 5:351208/1‑147 (MQ=38) ccatcccTACCTCAGTAGAGCAACGATGCATCGCCGATGGTAGTGTGGCGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAACCCCCTCTCTGC‑ACATTCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACag < 8:405876/147‑1 (MQ=14) ccGAACTCAGTAGTTAAACGATGCATCGCCGATGGTAGTGTTGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTc < 2:425080/148‑1 (MQ=255) cGAACTCAGTAGTGAAACGATGCATAGCCCATGGTAGTGTGGCCTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCAATCTGC‑ACAGGCAGGTAGGCGTTATGACTATAAGTAGGAACTACAGAGATTCg > 3:244611/1‑148 (MQ=14) cTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCa > 7:288262/1‑146 (MQ=255) cTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCa < 8:288262/146‑1 (MQ=255) tCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCa > 7:383781/1‑149 (MQ=255) agtagtGAAACGATGCATAGCTGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCACTAACTTC‑AAATGCAGGTAGGGTTTTTGTATTTAAGTAGGAACTACAGAGATTAGAAGCCAct > 5:227405/1‑148 (MQ=14) aaaCGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTaa > 6:18236/1‑114 (MQ=32) aaaCGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTaa < 5:18236/114‑1 (MQ=32) aaaCGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAgg > 7:389216/1‑149 (MQ=255) aaCGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAg > 6:14528/1‑147 (MQ=255) aaCGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAg < 5:14528/147‑1 (MQ=255) cATCGCCGATGGTAGTGTGGTGTTTCCCCATGTGATAGTAGGTCATCGTCTAGATTCATTTCGCAAAACCGCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAAGTACAGAGATTCGCAGGCACGTCCTAGGGACGGGc < 4:244611/148‑1 (MQ=18) cATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGcc < 6:351208/149‑1 (MQ=255) aTCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGc > 4:294987/1‑147 (MQ=255) tCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCTGGCCCGTCCCTAGGACGTGcctg < 5:5100/149‑3 (MQ=17) gCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGc < 2:207396/148‑1 (MQ=255) gtgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTc < 5:246605/148‑1 (MQ=255) tgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCtt > 6:1727/1‑149 (MQ=255) tgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCt < 8:383781/148‑1 (MQ=255) tttCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTgacga > 8:319971/1‑149 (MQ=255) ccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTg > 7:239875/1‑140 (MQ=255) ccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTg < 8:239875/140‑1 (MQ=255) aTGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGTGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGTACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATaga < 3:40615/149‑1 (MQ=255) gagaGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCAt > 7:301795/1‑149 (MQ=255) agTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATATGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAAATACAGAGATTCGCAGGCAAGTCCTAGGGACGGGCCAGCAAAAAGAATTTATTGACGACCATAGAGAATTg > 5:91577/1‑148 (MQ=25) tCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCAACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAacca > 1:77761/1‑149 (MQ=255) tCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAaccac < 8:389216/149‑1 (MQ=255) aTCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAcccaccg > 8:283300/1‑148 (MQ=255) aTCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCt > 1:86825/1‑149 (MQ=255) tCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCt > 2:147618/1‑148 (MQ=255) gATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGatcccat > 5:433338/1‑149 (MQ=255) gATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGatcccat > 1:43414/1‑149 (MQ=255) gATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGatcccat > 6:269042/1‑149 (MQ=255) aTTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGatcccatc > 3:123322/1‑149 (MQ=255) aTTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCAGAGAGCATTGGAACCGCCTGatccgagc > 8:386820/1‑145 (MQ=255) ttCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCGCGGACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGatcccatcc > 1:360212/1‑149 (MQ=255) aTTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTATGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGatcccatcc > 8:171550/1‑146 (MQ=255) aTTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTATGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGatcccatcc < 7:171550/146‑1 (MQ=255) tttCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCt < 1:355422/135‑1 (MQ=255) tttCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCt > 2:355422/1‑135 (MQ=255) tttCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGaa > 8:326847/1‑149 (MQ=255) tttCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGaa < 3:294987/149‑1 (MQ=255) tttCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGaa > 7:132270/1‑149 (MQ=255) tttCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGaa > 4:395682/1‑149 (MQ=255) tttCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGaa > 4:79573/1‑149 (MQ=255) tttCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGa > 8:78494/1‑148 (MQ=255) tCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATa < 2:18719/116‑1 (MQ=255) tCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATa > 1:18719/1‑116 (MQ=255) gacAAAACCCCTACCTGC‑ATGTGCAGATAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACt > 4:330461/3‑148 (MQ=255) gCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTca < 7:78494/149‑1 (MQ=255) cAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTcag < 7:319971/149‑1 (MQ=255) aaaCCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTcagca < 5:1727/149‑1 (MQ=255) aCCCCTATCTGC‑ACCTGCATGTATGTGTTTTGTCTTTAAGTATTAACTACAGAGATTCGCATCGAAGTCCTAGGTACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACAACATGATCCCATCCCGAACTCAGCAGt < 6:227405/149‑1 (MQ=25) aCCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGt > 5:69342/1‑149 (MQ=255) ccccTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAATAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGt > 4:421698/1‑148 (MQ=255) cccTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGc < 5:198977/83‑1 (MQ=255) cccTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGc > 6:198977/1‑83 (MQ=255) cccTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTg > 4:129990/1‑148 (MQ=255) cccTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACAATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTg > 6:122758/1‑148 (MQ=255) cTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGaaa > 1:356629/1‑149 (MQ=255) cTACCTGC‑ATGTGCAGATAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGaaa > 5:146058/1‑149 (MQ=255) | AGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGC‑ACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCAGTGAAA > NC_002947/181662‑181950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |