Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,306,917 | C→G | 6.4% | R234P (CGC→CCC) ‡ | livK ← | branched‑chain amino acids ABC transporter substrate‑binding protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,306,917 | 0 | C | G | 6.4% | 286.1 / 6.6 | 89 | R234P (CGC→CCC) ‡ | livK | branched‑chain amino acids ABC transporter substrate‑binding protein |
Reads supporting (aligned to +/- strand): ref base C (43/40); new base G (2/4); total (45/44) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.34e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.54e-01 |
TCTTGTTCGCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGCCTTTGC > NC_002947/1306771‑1307058 | tcttGTTCGCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGgcg > 8:217742/1‑148 (MQ=255) ttGTTCGCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAg > 2:351155/1‑149 (MQ=255) gTTCGCCGGGTCCGCGTCGAACGACTTCGTCATGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAgg < 7:184885/148‑1 (MQ=255) gTTCGCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCa < 3:188100/146‑1 (MQ=255) gTTCGCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAgg < 2:376445/148‑1 (MQ=255) gTTCGCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑a > 6:398930/1‑149 (MQ=255) cGCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑At > 1:287640/1‑147 (MQ=255) gCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAg > 8:51068/1‑149 (MQ=255) ccGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGATCCTGCGCCAGG‑CTCAgg < 3:285757/149‑1 (MQ=255) ccGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGATCCTGCGCCAGG‑CTCAgg < 5:99490/149‑1 (MQ=255) ggTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGc‑c > 4:111313/1‑148 (MQ=255) tCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAg < 2:332522/149‑1 (MQ=255) ccGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGc > 3:84686/1‑149 (MQ=255) gTCGAACGACTTCGGCAGGGTGACCCGCAGGCCTTCTGCGGCGTTCGGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAgg < 6:118357/139‑1 (MQ=255) gTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTGTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAgg > 5:118357/1‑139 (MQ=255) aaCGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGggtg > 3:68922/1‑149 (MQ=255) aaCGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGggtg < 8:18432/149‑1 (MQ=255) aaCGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGggt > 4:336078/1‑148 (MQ=255) aaCGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGggt < 3:336078/148‑1 (MQ=255) cGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGggtggt < 5:27061/149‑1 (MQ=255) gACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGggtgg > 2:432883/1‑147 (MQ=255) aCTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAg > 3:139320/1‑149 (MQ=255) cGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAgccg < 6:420792/148‑1 (MQ=255) ggTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCgtagt < 5:341905/149‑1 (MQ=255) ggTGACCAGCAGGCCTTCGGAGGCGTTCAGGGTGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCgtag > 1:248317/1‑148 (MQ=255) aCCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGAc > 4:111434/1‑149 (MQ=255) cagcagGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACg > 1:49493/1‑148 (MQ=255) cagcagGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACg > 4:185210/1‑148 (MQ=255) agcagGCCTTCGGAGGCGTTCTGGGTGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGaa < 2:248317/149‑1 (MQ=255) agcagGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACg > 3:294089/1‑147 (MQ=255) agcagGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGaa < 2:287640/149‑1 (MQ=255) tcagGCCTTCGGTGGAGGTCTGGTGGATCTGTGAAATGTAGTGGTTAGCCAGGGGTTCCGGACCCTTGAACTTGGCTTTCAGTCCTTTTTCCTGATCCTGGCGCAGT‑ATTAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAg < 4:139320/148‑1 (MQ=255) gcagGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAg < 1:351155/149‑1 (MQ=255) agGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTc < 1:172041/149‑1 (MQ=255) agGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTc < 2:49493/149‑1 (MQ=255) cTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACg < 3:185210/149‑1 (MQ=255) cTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CAAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACg > 6:49945/1‑149 (MQ=255) cGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACgttg > 8:278380/1‑149 (MQ=255) cGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACgt < 1:361320/147‑1 (MQ=255) cGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACgt < 4:68922/147‑1 (MQ=255) ggCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑Ct < 8:356452/149‑1 (MQ=255) cTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGCTTCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCtt < 1:107780/148‑1 (MQ=255) tGCGAAATGGAGTTGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGgat > 2:181916/1‑149 (MQ=255) cGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCt < 1:432883/143‑1 (MQ=255) cGAAATCGAGTCGGTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGga < 6:12711/146‑1 (MQ=255) aTGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCga < 8:222060/149‑1 (MQ=255) aTGGAGTCGTTACCCACGCCTGCCGGACCGATGAACTTGGCTTTCATGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCga < 7:350901/149‑1 (MQ=255) tGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCgag < 4:84686/149‑1 (MQ=255) gcgTCGTTACCCACGCCTTCCTGACACATCAACATGGCTTTCAGTCCTTTTTCCTCAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTCGCCGCCGTAGTAGACCAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCgagga < 8:132924/147‑1 (MQ=255) gAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCgag > 3:387900/1‑147 (MQ=255) aGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCgaggag > 2:141056/1‑149 (MQ=255) aGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCgag > 7:319012/1‑146 (MQ=255) gTTACCCACGGCTTCCGGACCCATGAACTTTGCTTTCACGCCTTTTTCCTGATGCTTGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTATTAGACGAAGTCCACGTTGTTCCTGCTTGAGCTTCTGGATGATCGAGGAGaa < 1:260655/148‑1 (MQ=255) ttACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAggc < 7:278380/149‑3 (MQ=255) tACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTc < 1:181916/148‑1 (MQ=255) cccACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCtt < 7:51068/149‑1 (MQ=255) cccACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCtt < 4:294089/149‑1 (MQ=255) cccACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCtt < 3:111313/149‑1 (MQ=255) aCGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGt > 3:241565/1‑148 (MQ=255) ccTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTGGACGTTGTT‑GTGCTTGGGCTGCGGGAGGATCGAGGAGATGTCCTTGTCAcg > 2:335886/1‑148 (MQ=255) cTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCAccc > 6:249747/1‑149 (MQ=255) tCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCcgc > 4:11219/1‑149 (MQ=255) ccGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCcgcg > 5:121718/1‑149 (MQ=255) aTGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGcc > 7:190086/1‑149 (MQ=255) aTGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGcc > 4:183285/1‑149 (MQ=255) aTGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGcc > 2:73902/1‑149 (MQ=255) aTGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGACGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCATTGTCACAAGCGTTCAGGca > 3:237097/1‑148 (MQ=255) tGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCt < 4:412211/149‑1 (MQ=255) cTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCt < 3:162871/145‑1 (MQ=255) cTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCt > 4:162871/1‑145 (MQ=255) ttGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGaa > 5:334366/1‑149 (MQ=255) tCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGc < 4:214866/148‑1 (MQ=255) tCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGc > 4:255337/1‑148 (MQ=255) aGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAAc > 1:417136/1‑149 (MQ=255) gCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCt > 7:270419/1‑149 (MQ=255) gcctgatCCTGCGCCAGGCTCAGGAAAAAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACg > 6:61514/7‑142 (MQ=255) gcctgatCCTGCGCCAGGCTCAGGAAAAAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACg < 5:61514/136‑1 (MQ=255) tttttCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTgg > 3:368072/1‑149 (MQ=255) tttttCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTgg > 5:256811/1‑149 (MQ=255) ttttCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTc > 6:316481/1‑123 (MQ=255) ttttCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTc < 5:316481/123‑1 (MQ=255) tttCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGt < 6:334366/148‑1 (MQ=255) ccTGATCCTGCGCCAGG‑CTCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCt < 6:215231/125‑1 (MQ=255) ccTGATCCTGCGCCAGG‑CTCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCt < 6:209395/125‑1 (MQ=255) ccTGATCCTGCGCCAGG‑CTCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCt > 5:215231/1‑125 (MQ=255) ccTGATCCTGCGCCAGG‑CTCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCt > 5:209395/1‑125 (MQ=255) ccTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGCCt > 1:426184/1‑149 (MQ=255) tGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTCGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTACTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGCCttt > 8:193925/1‑149 (MQ=255) gAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGCCTTTg > 4:259318/1‑149 (MQ=255) aGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGCCTTTGc < 6:256811/149‑1 (MQ=255) | TCTTGTTCGCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGCCTTTTTCCTGAGCCTGGCGCAGG‑ATCAGGC‑CCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTT‑CTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGCCTTTGC > NC_002947/1306771‑1307058 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |