| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,364,660 | A→T | 5.6% | intergenic (+30/+119) | dctA‑I → / ← PP_1189 | C4‑dicarboxylate transport protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,364,660 | 0 | A | T | 5.6% | 248.1 / 2.6 | 83 | intergenic (+30/+119) | dctA‑I/PP_1189 | C4‑dicarboxylate transport protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (40/37); new base T (2/3); total (42/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCAAGGAAATGGACAACGACAAGCTGGCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGAT > NC_002947/1364518‑1364808 | tCAAGGAAATGGACAACGACAAGCTGGCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGc > 5:121985/1‑149 (MQ=255) aaGGAAATGGACAACGACAAGCTGGCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCt > 5:91145/1‑149 (MQ=255) aGGAAATGGACAACGACAAGCTGGCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGccat > 1:392116/1‑147 (MQ=255) gAAATGGCCAACGACAAGCTGGCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCtttt < 8:133197/149‑1 (MQ=255) aaaTGGACAACGACAAGCTGGCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCTTTGGTCGCCtttct < 5:251873/149‑3 (MQ=255) aaTGGACAACGACAAGCTGGCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTc < 3:193844/149‑1 (MQ=255) tGGACAACGACAAGCTGGCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCgt < 8:117311/149‑1 (MQ=255) aCGACAAGCTGGCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAgc > 2:153562/1‑149 (MQ=255) cGACAAGCTGGCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCgt > 1:398019/1‑142 (MQ=255) cGACAAGCTGGCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCgt < 2:398019/142‑1 (MQ=255) gccAAGCGGGCGTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATCCCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGGTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAgcgc < 4:222127/147‑1 (MQ=255) aaGCTGGCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGa < 5:433409/149‑1 (MQ=255) cTGGCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTGTTTCGTGTTAGCGCGGAccc > 6:31171/1‑149 (MQ=255) ggCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAgcgc < 4:320736/141‑1 (MQ=255) ggCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAgcgc > 3:320736/1‑141 (MQ=255) ggCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCtt < 3:322637/149‑1 (MQ=255) gCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCtt < 7:88217/148‑1 (MQ=255) gCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCtt < 6:321586/148‑1 (MQ=255) ggAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTgg > 6:83066/1‑149 (MQ=255) aaCTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGc < 6:91145/149‑1 (MQ=255) aaCTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGc > 8:402743/1‑149 (MQ=255) gACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGc > 1:198165/1‑149 (MQ=255) ggtggtGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAAtt < 1:296158/149‑1 (MQ=255) gtgCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCt < 1:11866/148‑1 (MQ=255) gtgCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCt > 7:311169/1‑148 (MQ=255) tgCGCCGCTGATCGATACCCGCCGGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAATGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTaa < 6:203428/149‑1 (MQ=255) tgCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTaa < 6:121985/149‑1 (MQ=255) ccgcTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGc < 5:230161/149‑1 (MQ=255) gcTGATCGATACCCGCCCGACGGACGACCTGGGCGTGTCTGAATGCCCGTCTCGTTGATTGCTGGTTGAA‑ATGATAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTg < 2:392116/149‑1 (MQ=255) cGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTgg > 4:62283/1‑119 (MQ=255) cGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTgg < 3:62283/119‑1 (MQ=255) tACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGAtt < 1:175241/148‑1 (MQ=255) ccgcccgACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAAGGTGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGa > 1:342862/1‑149 (MQ=255) ccgcccgACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGAc > 7:306591/1‑149 (MQ=255) ccgcccgACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGAc > 2:259045/1‑149 (MQ=255) cgACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTgg < 7:402743/149‑1 (MQ=255) gacggacgACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTgg > 4:384264/1‑148 (MQ=255) acgacCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCgg > 4:210906/1‑149 (MQ=255) cgacCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCggg < 3:210906/149‑1 (MQ=255) ccTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGCCCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCtt > 5:315823/1‑149 (MQ=255) ccTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCtt > 4:177034/1‑149 (MQ=255) cTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTg > 2:136557/1‑149 (MQ=255) tGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGc > 3:212159/1‑149 (MQ=255) gggCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGcc > 8:9385/1‑149 (MQ=255) gCGTGGCTGCAGGCCCGGCGCGTTGAGAGCTGGGTGAA‑ATGAGAAAGTCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTTGACTGTGGGAGCGGGCTTGCCcg < 8:359110/149‑1 (MQ=38) gTGGCTGAATGCCCGGATCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCTACCAAAGTTCGCCTTTTTCGTGTTAGGGCTGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAATCTGGCGTGATTGGACTGTGGGAGCGGGCTTGCCcgcg < 1:259045/149‑1 (MQ=38) ggCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACtgt < 4:99030/128‑1 (MQ=255) ggCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACtgt > 3:99030/1‑128 (MQ=255) gCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGaa > 2:219045/1‑148 (MQ=255) aaGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACgg > 7:403407/1‑149 (MQ=255) ggCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGc > 4:82656/1‑149 (MQ=255) gCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCg < 7:9385/149‑1 (MQ=255) cccGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGa < 3:389023/149‑1 (MQ=255) ccGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGaa < 2:198165/149‑1 (MQ=255) cGGCTCGTTGAGAGCTGGTTGAA‑AGGAGACAGGCGACCAACGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAg < 5:31171/149‑1 (MQ=255) gCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGcc < 3:384264/149‑1 (MQ=255) ttGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTgg > 1:20656/1‑149 (MQ=255) ttGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTgg > 5:164287/1‑149 (MQ=255) tGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGc > 8:53198/1‑149 (MQ=255) gagaGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGa > 4:125055/1‑104 (MQ=255) gagaGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGa < 3:125055/104‑1 (MQ=255) gCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCa < 7:330727/149‑1 (MQ=255) cTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCa < 4:212159/148‑1 (MQ=255) cTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAg < 1:153562/149‑1 (MQ=255) tGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGc > 1:328475/1‑149 (MQ=255) tGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTAAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGc > 8:102051/1‑149 (MQ=255) gTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGcc > 7:120366/1‑148 (MQ=255) gTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGcc < 2:20656/148‑1 (MQ=255) gAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCt > 1:376796/1‑140 (MQ=255) gAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCt < 2:376796/140‑1 (MQ=255) gAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAg > 4:37063/1‑148 (MQ=255) aa‑aTGAGAAAGGCGACCAATGGTCGACTTTTTCGTGTTAGCGGGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGt < 6:315823/148‑1 (MQ=255) cacgaaaaaGGCGACCTTTGGTCGCCTTTCTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTAc > 5:400742/7‑149 (MQ=37) acgaaaaaGGCGACCTTTGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTAc > 4:248101/6‑148 (MQ=255) aTGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTAc > 7:365762/1‑148 (MQ=255) gagaAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCAc > 1:156685/1‑149 (MQ=255) gaAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACtt < 7:102051/149‑1 (MQ=255) aaGGCGACCTTTGGTCGCCTTTCTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTcc < 3:418528/149‑1 (MQ=255) aaGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTcc < 3:82656/149‑1 (MQ=255) ggCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCaa < 2:328475/149‑1 (MQ=255) gCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCaa > 6:137565/1‑148 (MQ=255) gACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAacac > 3:220473/1‑149 (MQ=255) gACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAacac > 3:390351/1‑149 (MQ=255) aGGTCGCCTTTTTCGTGTTAGCGCGTACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGAt < 3:37063/149‑1 (MQ=255) aGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACATGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGAt < 5:83066/149‑1 (MQ=255) | TCAAGGAAATGGACAACGACAAGCTGGCTTCGGAACTGGACTCCGGTGGTGCGCCGCTGATCGATACCCGCCCGACGGACGACCTGGGCGTGGCTGAAGGCCCGGCTCGTTGAGAGCTGGTTGAA‑ATGAGAAAGGCGACCAAAGGTCGCCTTTTTCGTGTTAGCGCGGACCCTTGTGTGGGCCTTGCTCAATTTCTAAAAGCTGGCGCGATTGGACTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGGCCCTCAGCCCAGTACCACTTCCAACACCCGGAT > NC_002947/1364518‑1364808 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |