Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,368,199 G→C 5.9% intergenic (+28/‑155) PP_1193 → / → PP_1194 membrane protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,368,1990GC 5.9% 244.2 / 4.4 80intergenic (+28/‑155)PP_1193/PP_1194membrane protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (36/39);  new base C (3/2);  total (39/41)
Fisher's exact test for biased strand distribution p-value = 6.71e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.87e-01

GGTGGTGAACCTGGTGACGATCACGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTGGGATTAATTCCCGCGTCTTATACTGG  >  NC_002947/1368054‑1368337
                                                                                                                                                  |                                                                                                                                          
ggtggtGAACCTGGTGACGATCACGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACg                                                                                                                                        >  2:282458/1‑149 (MQ=255)
    gtgAACCTGGTGACGATCACGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGt                                                                                                                                     >  7:281997/1‑149 (MQ=255)
        aCCTGGTGACGATCACGGCAACCATGGGGGTGGCGAACCCGGTAATGACCAGGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTg                                                                                                                                 <  2:296668/149‑1 (MQ=255)
         ccTGGTGACGATCACGGCAACCATGTGGGGGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGt                                                                                                                                <  7:32125/149‑1 (MQ=255)
          cTGGTGACGATCACGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTa                                                                                                                               <  4:99658/149‑1 (MQ=255)
           tGGTGACGATCACGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTAt                                                                                                                              >  4:227621/1‑149 (MQ=255)
           tGGTGACGATCACGGCAACCATGTGGGTGGCGAACCCGGTAATGACAACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCAGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTAt                                                                                                                              >  6:218275/1‑149 (MQ=255)
            ggTGACGATCACGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCGTCCGCTGGGTTTTGTATg                                                                                                                             <  7:48593/149‑1 (MQ=255)
            ggTGACGATCACGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTAt                                                                                                                              >  8:279743/1‑148 (MQ=255)
             gTGACGATCACGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGTCCATACAAAACCCAGCGGACGGGTTTTGTa                                                                                                                               <  6:15056/146‑1 (MQ=255)
             gTGACGATCACGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGTCCATACAAAACCCAGCGGACGGGTTTTGTa                                                                                                                               >  5:15056/1‑146 (MQ=255)
             gTGACGATCACGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTAt                                                                                                                              <  5:93262/147‑1 (MQ=255)
                 cGATCACGGAAACCATGTGTTTTGCGAACCATGTAATTACAACGGTTTTCATGCCGGCTGCGAGGCCGGGTATGACAAAAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCATCGGACGGGTTTTGTATGAGCAg                                                                                                                        <  8:120578/149‑1 (MQ=255)
                    tCACGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGtt                                                                                                                     <  2:266331/149‑1 (MQ=255)
                    tCACGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGtt                                                                                                                     >  8:295530/1‑149 (MQ=255)
                       cGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGc                                                                                                                          >  8:166471/1‑141 (MQ=255)
                       cGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGc                                                                                                                          <  7:166471/141‑1 (MQ=255)
                       cGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTg                                                                                                                  >  1:222072/1‑149 (MQ=255)
                       cGGCAACCATGTGGGTGGCGAACCCGGTAATGAACACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGCCGGGTTTTGTATGAGCAGGTTCTg                                                                                                                  >  4:252933/1‑149 (MQ=255)
                           aaCCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACgg                                                                                                                                       >  7:284993/1‑124 (MQ=255)
                           aaCCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACgg                                                                                                                                       <  8:284993/124‑1 (MQ=255)
                           aaCCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCt                                                                                                              <  3:227621/149‑1 (MQ=255)
                                        gCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTa                                                                                                  >  6:9602/1‑148 (MQ=255)
                                              ccGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTc                                                                                           <  2:383610/149‑1 (MQ=255)
                                               cGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCa                                                                                          >  1:212662/1‑149 (MQ=255)
                                                    aTGACGACGGTGTTCATGCCGTCGGCGAGGCCGGGGATGACAAGAGCAGTATCTGATTGGCGCTGACCCGTAGTGGCCCATCCAAAACCCAGCGGAGGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTc                                                                                      <  7:403054/148‑1 (MQ=255)
                                                    aTGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTc                                                                                      <  6:257331/148‑1 (MQ=255)
                                                     tGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGTCCTGTCTTGCCTTTATCACGTCATTTCCa                                                                                    <  5:218275/149‑1 (MQ=255)
                                                       aCCACGGTGTTCATGCCGGCGGCGATGCCGGGGATGAAAACAGCAGAAGCTGATTTGCTCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCaa                                                                                   <  7:55699/148‑1 (MQ=255)
                                                         cACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAAt                                                                                  >  1:75067/1‑147 (MQ=255)
                                                                ttCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGa                                                                         <  3:200843/149‑1 (MQ=255)
                                                                ttCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGa                                                                         <  5:9602/149‑1 (MQ=255)
                                                                ttCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGATTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGa                                                                         >  3:297907/1‑149 (MQ=255)
                                                                  cATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGAc                                                                        <  7:295530/148‑1 (MQ=255)
                                                                   aTGCCGGCGGCTAGGCCGGGGATGACAACTGCATAAGCTGATTTGCGCTGACCCGATGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACa                                                                       <  6:96737/148‑1 (MQ=255)
                                                                   aTGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGcc                                                                                                      <  8:238748/117‑1 (MQ=255)
                                                                   aTGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGcc                                                                                                      >  7:238748/1‑117 (MQ=255)
                                                                    tGCCGGCGGCGAGGCCGGGGATGAGCAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAg                                                                      >  7:63441/1‑149 (MQ=255)
                                                                    tGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGc                                                                     >  6:49760/1‑149 (MQ=255)
                                                                      ccGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCtt                                                                   <  4:314340/149‑1 (MQ=255)
                                                                        ggcggcGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCtttt                                                                 <  3:385015/149‑1 (MQ=255)
                                                                            gcgAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCt                                                             <  2:222072/149‑1 (MQ=255)
                                                                            gcgAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGGATGAGCAGGATCTGGCCTGTCTTGCCTTTATCACGTCATTTCGAATGAGCGCTGACTGCTTTTTACt                                                             >  6:63125/1‑149 (MQ=255)
                                                                                         tGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCggg                                                <  2:212662/149‑1 (MQ=255)
                                                                                             caacaGCAGAAGCTGATTGGCGCTGACCCGAAGTTGCCCATACAAAACCCAGCGGACGGGttt                                                                                                                                   <  4:237831/63‑1 (MQ=255)
                                                                                             caacaGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGata                                             >  5:384486/1‑149 (MQ=255)
                                                                                              aacaGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATg                                                     <  5:424172/140‑1 (MQ=255)
                                                                                              aacaGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATg                                                     >  6:424172/1‑140 (MQ=255)
                                                                                              aacaGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGatat                                            >  8:46562/1‑149 (MQ=255)
                                                                                              aacaGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCCGACGGGTTTTGTATGAGCATGTTCTGGCCTGTCATGCCTTTATCACGTCATTTACAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGatat                                            >  6:348399/1‑149 (MQ=255)
                                                                                                 agcagAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGGCTGTCTTTCCTTTATCACGTCATTTCCTATGAGCGCTGACAGATTTTTCGTCGTCTATGCCGGGATATGAt                                         >  4:247686/1‑149 (MQ=255)
                                                                                                   cagAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCTGGATATGAtt                                        <  6:223649/148‑1 (MQ=255)
                                                                                                   cagAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGAtt                                        >  5:223649/1‑148 (MQ=255)
                                                                                                   cagAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTg                                       >  6:384479/1‑149 (MQ=255)
                                                                                                   cagAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTg                                       >  8:337968/1‑149 (MQ=255)
                                                                                                    agAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGc                                      >  3:279426/1‑149 (MQ=255)
                                                                                                     gAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCg                                     <  1:282458/149‑1 (MQ=255)
                                                                                                     gAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGATTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCg                                     <  4:297907/149‑1 (MQ=255)
                                                                                                     gAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACCGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATAACGTCATTTCCAATGATCCCTGACAGCTTTTTCATCGTCCATGCCGGGATATCATTgag                                     >  4:68900/1‑147 (MQ=255)
                                                                                                         cTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGttt                                 <  3:68900/149‑1 (MQ=255)
                                                                                                            agtGGCGCTGTCCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGTCTTTATCACGTGATTTCCAATGAGAGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGTTTGCTGTTTg                                <  4:79544/145‑1 (MQ=255)
                                                                                                            aTTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGTGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGttt                                 <  7:279743/146‑1 (MQ=255)
                                                                                                            aTTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGc                               <  7:337968/148‑1 (MQ=255)
                                                                                                             ttGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGt                             <  8:63441/149‑1 (MQ=255)
                                                                                                             ttGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGt                             <  3:93368/149‑1 (MQ=255)
                                                                                                                gcgcTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTgg                           >  6:240226/1‑148 (MQ=255)
                                                                                                                 cgcTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTGGGa                         <  5:49760/149‑1 (MQ=255)
                                                                                                                  gcTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTGGGAt                        >  5:249705/1‑149 (MQ=255)
                                                                                                                      aCCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTGGGATTaa                     <  7:46562/148‑1 (MQ=255)
                                                                                                                        ccGAAGTGGCCCATACAAAACCCAGCGGACGCGTTTTGTATGAGCAGGTTCTGGCCTGTCTAGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCAGGGATATGATTGCGGTTTGCGTGGGATTAATTc                  >  8:411200/1‑149 (MQ=255)
                                                                                                                          gAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTGGGATTAATTccc                >  3:245737/1‑149 (MQ=255)
                                                                                                                           aaGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGAGATGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTGGGATTAATTCCcg               >  2:103729/1‑149 (MQ=255)
                                                                                                                            agttccgcATAGAAAACCCAGCGTACTGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTTCCTTTATGACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTGGGATTAATTCCcgc              <  3:252933/142‑1 (MQ=255)
                                                                                                                                gctcATACAAAACCCGTCCGCTGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTGGGATTAATTCCCGCGTCt          >  4:56506/4‑149 (MQ=255)
                                                                                                                                gCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTGGGATTAATTCCCGCGTCt          >  7:56183/1‑149 (MQ=255)
                                                                                                                                     tACAAAACCCGTCCGCTGGGTTTTGTATGGGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTGGGAt                        <  3:11743/130‑1 (MQ=39)
                                                                                                                                     tACAAAACCCGTCCGCTGGGTTTTGTATGGGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTGGGAt                        >  4:11743/1‑130 (MQ=39)
                                                                                                                                        aaaaCCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTGGGATTAATTCCCGCGTCTTATACTgg  >  7:205749/1‑149 (MQ=255)
                                                                                                                                        aaaaCCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTGGGATTAATTCCCGCGTCTTATACTgg  <  6:384486/149‑1 (MQ=255)
                                                                                                                                        aaaaCCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTGGGATTAATTCCCGCGTCTTATACTgg  >  4:367726/1‑149 (MQ=255)
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GGTGGTGAACCTGGTGACGATCACGGCAACCATGTGGGTGGCGAACCCGGTAATGACCACGGTGTTCATGCCGGCGGCGAGGCCGGGGATGACAACAGCAGAAGCTGATTGGCGCTGACCCGAAGTGGCCCATACAAAACCCAGCGGACGGGTTTTGTATGAGCAGGTTCTGGCCTGTCTTGCCTTTATCACGTCATTTCCAATGAGCGCTGACAGCTTTTTCCTCGTCCATGCCGGGATATGATTGCGGTTTGCGTGGGATTAATTCCCGCGTCTTATACTGG  >  NC_002947/1368054‑1368337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: