| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,568,915 | G→A | 6.3% | intergenic (+52/‑275) | pcaK → / → pcaF‑I | 4‑hydroxybenzoate transporter/beta‑ketoadipyl‑CoA thiolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,568,915 | 0 | G | A | 6.3% | 237.3 / 2.6 | 79 | intergenic (+52/‑275) | pcaK/pcaF‑I | 4‑hydroxybenzoate transporter/beta‑ketoadipyl‑CoA thiolase |
| Reads supporting (aligned to +/- strand): ref base G (36/38); new base A (2/3); total (38/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.37e-01 | |||||||||||
AGCAGGTGCTGACGGCGTTGCTGGTACCGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGTCTCCTTAATCTGGGTTTACCGAAGCAC > NC_002947/1568772‑1569062 | aGCAGGTGCTGACGGCGTTGCTGGTACCGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGggcggc < 7:147431/149‑1 (MQ=255) gCAGGTGCTGACGGCGTTGCTGGTACCGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGgcggcg < 3:302902/149‑1 (MQ=255) taGGTGCTGACGGCGTTGCTGGTACCGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCCCCTGCGGGAGCGGCGt < 3:167006/148‑1 (MQ=255) ggTGCTGACGGCGTTGCTGGTACCGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTtg < 8:359349/149‑1 (MQ=255) tGCTGACGGCGTTGCTGGTACCGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCTGCTCCCGCAGGGGCGGCGTtgtg < 1:362585/149‑1 (MQ=255) tGCTGACGGCGTTGCTGGTACCGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTtgtg < 6:53548/149‑1 (MQ=255) cTGACGGCGTTGCTGGTACCGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTtgtg < 4:303263/147‑1 (MQ=255) cTGACGGCGTTGCTGGTACCGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTtgtg > 3:303263/1‑147 (MQ=255) ggCGTTGCTGGTACCGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAAt > 5:311044/1‑149 (MQ=255) cTGGTACCGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGgcg < 5:259124/149‑1 (MQ=255) tGGTACCGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGgcg > 3:345162/1‑148 (MQ=255) gTACCGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGca > 3:83197/1‑148 (MQ=255) tACCGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGca > 6:66074/1‑147 (MQ=255) ccGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGt > 6:146515/1‑149 (MQ=255) gcgcTGGCGACCGTGGGTGTGGTCGTGAATGGGGGTGTCAGCCACGCCGCCTACAGAACCTGAGTGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGc < 1:359733/149‑1 (MQ=255) gcTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTgc > 3:21650/1‑149 (MQ=255) cTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACACAACCTGAGGGCGAGGGCCGCGTTGCGGCCCTATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTgc < 1:354559/149‑1 (MQ=255) tGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTgcgc > 8:283716/1‑149 (MQ=255) gCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTgcgc < 7:264337/147‑1 (MQ=255) gCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGt > 6:181302/1‑149 (MQ=255) gACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTgg > 4:327603/1‑149 (MQ=255) gACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTgg > 1:242832/1‑149 (MQ=255) gACCGGGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTgg < 5:96435/149‑1 (MQ=255) cGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGcac < 6:208420/129‑1 (MQ=255) cGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGcac > 5:208420/1‑129 (MQ=255) gTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTg < 2:242832/149‑1 (MQ=255) gggAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGa > 6:421444/1‑149 (MQ=255) ggAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGAt < 4:21650/149‑1 (MQ=255) gAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGa > 6:234481/1‑147 (MQ=255) aGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAg < 8:350403/149‑1 (MQ=255) ggTCGTCAAGGGGCTCGTCAGACACGCAG‑‑‑ACGCAACCTGAGGGCCAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCACGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCg > 6:332855/1‑149 (MQ=255) cAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGcaa > 6:341050/1‑148 (MQ=255) aaGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGcaaca < 4:345162/149‑1 (MQ=255) gCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATgg < 5:421444/149‑1 (MQ=255) tGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGtt > 5:91940/1‑149 (MQ=255) gTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTc < 7:283716/148‑1 (MQ=255) gTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCg < 4:404956/149‑1 (MQ=255) gTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCg < 1:85434/149‑1 (MQ=255) tCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGt > 6:196842/1‑149 (MQ=255) cACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGAGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATc < 4:131320/149‑1 (MQ=255) aCGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCg > 5:226280/1‑149 (MQ=255) ccG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGca > 4:218580/1‑148 (MQ=255) gCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATa > 7:89111/1‑149 (MQ=255) gCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAAAGGGTCGTTAATCGCACAGa > 4:395715/1‑147 (MQ=255) aCCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTc < 6:311044/149‑1 (MQ=255) aCCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTc < 5:181302/149‑1 (MQ=255) tgtgaatgggcCGCAACGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTa > 3:402229/8‑149 (MQ=255) gagggcCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGa < 5:341050/149‑1 (MQ=255) gggcCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGAtt > 8:7640/1‑149 (MQ=255) ccGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGgc < 8:76742/67‑1 (MQ=255) ccGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGgc > 7:76742/1‑67 (MQ=255) ccGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTa < 3:327603/149‑1 (MQ=255) cgcgTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGt > 1:328129/1‑147 (MQ=255) gcgTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAg < 7:7640/149‑1 (MQ=255) gcgTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAg < 5:196842/149‑1 (MQ=255) ggCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGtaccta < 4:204505/149‑1 (MQ=255) gCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGAtt < 8:344711/136‑1 (MQ=255) gCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGAtt > 7:344711/1‑136 (MQ=255) ccc‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGAGCACAGT‑TGGCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGtacctacc < 3:250808/149‑1 (MQ=255) cc‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGtacctac > 6:271130/1‑147 (MQ=255) c‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAg > 3:145440/1‑149 (MQ=255) gcagcacaaCGCCGCCCCTGCGGGAGCGGCGTTATGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGTCTcc > 5:202197/8‑149 (MQ=38) acaGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGtctc < 6:226280/148‑1 (MQ=255) acaGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGtctc < 7:304965/148‑1 (MQ=255) aGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGTCTCCtt < 5:393530/149‑1 (MQ=255) tAACGCCGCTCCCGCAGGGGCGGGGTTTTGCTGCAATCAGGGCGCTCATG‑TGACCTGCGCGGGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGTATTGTAAGGTACATACCAGTCTcc < 6:390437/143‑1 (MQ=255) tAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGTCTcc > 5:390437/1‑143 (MQ=255) tAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGTCTCCTTAATc > 3:34614/1‑149 (MQ=255) aaCGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGTCTCCTTAATCt > 7:211245/1‑149 (MQ=255) aaCGCCGCCCCTGCGGGAGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCg > 8:13287/1‑91 (MQ=38) aaCGCCGCCCCTGCGGGAGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCg < 7:13287/91‑1 (MQ=38) cgccgcTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGTCTCCTTAATCTgg < 5:66074/149‑1 (MQ=255) cgccgcTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGTCTCCTTAATCTgg < 5:234481/149‑1 (MQ=255) gccgcTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGTCTCCTTAATCTggg > 6:386519/1‑149 (MQ=255) gccgcTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGACAGTCGATTATCGGATTGTAAGGtacct > 7:32147/1‑129 (MQ=255) gcTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGTGTGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGTCTCCTTAATCTGGGtt > 1:84301/1‑149 (MQ=255) cccGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGAGAGTCGATTATCGGATTGTAAGCTACCTACAAGTCTCCTTAATCTGGGATTAcc > 2:349565/1‑149 (MQ=255) ccGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGTCTCCTTAATCTGGGTTTACCg < 4:402229/149‑1 (MQ=255) gCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGTCTCCTTAATCTGGGTTTACCGaa < 6:91940/149‑1 (MQ=255) aGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGTCTCCTTAATCTGGGTTTACCGAAGc < 4:83197/149‑1 (MQ=255) gggCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGTCTCCTTAATCTGGGTTTACCGAAGCAc > 1:420386/1‑149 (MQ=255) | AGCAGGTGCTGACGGCGTTGCTGGTACCGGCGGCGCTGGCGACCGTGGGAGTGGTCGTCAAGGGGCTGGTCAGCCACGCCG‑‑‑ACGCAACCTGAGGGCGAGGGCCGCGTTGCGGCCC‑ATTCACAGCGTAACGCCGCTCCCGCAGGGGCGGCGTTGTGCTGCAATCAGGGCGCACAGT‑TGCCCTGCGCGTGGGGTGGATAGTCGTGCAACAAATGGTTCGTTAATCGCACAGATAGTCGATTATCGGATTGTAAGGTACCTACCAGTCTCCTTAATCTGGGTTTACCGAAGCAC > NC_002947/1568772‑1569062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |