| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 196,306 | T→C | 16.1% | N604N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,306 | 0 | T | C | 16.1% | 368.7 / 59.7 | 170 | N604N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (65/76); new base C (14/13); total (81/89) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
Only 100 of 171 total aligned reads displayed.
GGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACG > NC_002947/196159‑196454 | gggCGTTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGATCATACCACGATCAACGACTCGGTCGACACCACTACCGAGACCCTGACGGCGAGACCGTCGGTCACCGAAGGCGTCGTGATCACTTACACCGTGACCCTTAGCAATc < 6:24183/149‑1 (MQ=14)gggCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATc < 8:201315/149‑1 (MQ=39)gggCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATc > 2:277487/1‑149 (MQ=39) gTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGcc > 2:431955/1‑149 (MQ=39) tttCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCAGAGCAATCCTGCCCAGa > 4:197072/1‑149 (MQ=255) ttCGAGCAACTGCCCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGAc > 7:330991/1‑149 (MQ=255) ttCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGCCCCTGAGCAATCCTGCCCAGAc > 8:296084/1‑149 (MQ=255) tCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGAc < 4:391870/148‑1 (MQ=39) gAGCAACTGCCCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGcc < 2:167699/149‑1 (MQ=255) aGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCTGTCGACACCACTACCGCGACCCTGACTGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCATTCCTGCCCAGACACCg < 6:199681/149‑1 (MQ=255) cAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt > 2:149546/1‑149 (MQ=37) aCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑Ga < 5:288386/149‑1 (MQ=37) aCCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑Ca < 7:401834/147‑1 (MQ=38) aCCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑Ca < 2:314373/147‑1 (MQ=38) aCCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGt < 3:197072/149‑1 (MQ=39) ccccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTg < 7:324406/149‑1 (MQ=39) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGa > 8:128085/1‑149 (MQ=39) cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGAcc > 5:105858/1‑149 (MQ=39) aaCCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCt < 3:426462/149‑1 (MQ=39) ccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTc > 1:74891/1‑149 (MQ=39) ccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTc < 5:9280/149‑1 (MQ=39) gCCGGCTCAGACCACGATCCACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGTCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACg < 6:71014/149‑1 (MQ=255) gCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCACACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACg < 1:244170/149‑1 (MQ=255) cGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGTTGGA‑CAGGGTCACTGTcaccggc > 2:269539/1‑143 (MQ=11) ggCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGc > 1:223072/1‑148 (MQ=39) gCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGAcc > 6:403212/1‑135 (MQ=40) gCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGAcc < 5:403212/135‑1 (MQ=40) cTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCaa < 3:179744/149‑1 (MQ=39) tCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCaaa > 7:218008/1‑149 (MQ=39) aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCaaa < 2:223072/147‑1 (MQ=39) aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAAc > 6:190520/1‑148 (MQ=39) aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAAc > 8:327536/1‑148 (MQ=39) aGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAAc > 3:352517/1‑148 (MQ=39) aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCAt < 4:352517/149‑1 (MQ=39) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTa > 1:161205/1‑149 (MQ=39) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTa > 2:37404/1‑149 (MQ=39) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCg > 5:150050/1‑149 (MQ=39) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCg > 8:372667/1‑149 (MQ=39) aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGt < 5:190520/149‑1 (MQ=39) tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑Ac > 4:420735/1‑131 (MQ=40) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTg < 7:372667/148‑1 (MQ=39) aCGTCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAACGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGaa < 3:246927/149‑1 (MQ=255) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt < 4:296148/109‑1 (MQ=35) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt > 3:296148/1‑109 (MQ=35) tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATcc > 6:431036/1‑89 (MQ=38) tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATcc < 5:431036/89‑1 (MQ=38) ggTCGACACCACTACCGGGACGGTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGGCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTTGCGTTGAAGCCg < 8:166897/146‑1 (MQ=14) gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAAc < 1:277487/149‑1 (MQ=40) accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAAcc > 6:39114/1‑147 (MQ=38) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGa < 7:18586/132‑1 (MQ=34) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGa > 8:18586/1‑132 (MQ=34) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGc > 4:292597/1‑135 (MQ=34) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGc < 3:292597/135‑1 (MQ=34) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCa < 8:393882/140‑1 (MQ=34) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg < 2:256393/149‑1 (MQ=17) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg > 2:46013/1‑149 (MQ=37) acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg < 3:126638/149‑1 (MQ=17) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCg < 3:38212/149‑1 (MQ=34) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGActt < 3:80466/149‑1 (MQ=255) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGActt > 7:58921/1‑149 (MQ=255) gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt > 5:280340/1‑141 (MQ=12) gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt < 6:280340/141‑1 (MQ=12) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 8:218008/148‑1 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 2:74891/148‑1 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 8:330991/148‑1 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc < 6:150050/147‑1 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 2:56069/149‑1 (MQ=34) cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑TA‑CAGTGACCCTGTCCAGTCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 1:331816/148‑1 (MQ=255) cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 6:346577/148‑1 (MQ=34) ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGa > 5:360070/1‑149 (MQ=34) gCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAc < 8:37421/149‑1 (MQ=255) gCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg > 3:30464/1‑149 (MQ=34) cccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACGGTTGAAGCCGGCAACACCCAGGGCAGCGTCGATTTCCAGACCCCgg > 6:106893/1‑149 (MQ=17) ggTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAt < 1:113223/148‑1 (MQ=255) gTCACCGAAGGCGGCGTGATCACTTACACCGTGCCCCTGAGCACTCCTGCCCAGACGCCGGT‑GA‑CAGTGCCCCTGTCCA‑CCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa > 5:272241/1‑149 (MQ=255) gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa > 7:19727/1‑149 (MQ=34) aCCGAAGGCGGCGTGATCACTTACACCGTGTCCCTGAGCAATCCTGCCCAGACGCGGGT‑GACCAGT‑CCCGCGCCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGt < 1:142653/149‑1 (MQ=11) ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc < 6:161948/149‑1 (MQ=34) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 5:315912/1‑148 (MQ=34) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCt < 7:163639/149‑1 (MQ=255) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAACCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑Ac > 4:244296/1‑76 (MQ=21) cGAAGGCGGCGTCATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑Ac < 3:244296/76‑1 (MQ=21) aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa > 7:243845/1‑148 (MQ=34) aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTac < 6:287083/149‑1 (MQ=255) cggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTAACGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTacaac > 7:282279/1‑148 (MQ=11) ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 7:237492/121‑1 (MQ=35) ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc > 8:237492/1‑121 (MQ=35) ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa < 6:265151/149‑1 (MQ=34) tGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCgg > 4:319105/1‑126 (MQ=255) aCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 6:149319/148‑1 (MQ=34) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 3:208928/1‑148 (MQ=255) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt < 8:58921/148‑1 (MQ=255) cGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgtg < 7:128085/149‑1 (MQ=35) cGTGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgcg > 8:321801/1‑147 (MQ=255) gTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgtgt > 7:111988/1‑149 (MQ=37) tGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt > 1:416789/1‑140 (MQ=33) tGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTc > 4:270513/1‑149 (MQ=37) tGACCCTGAGCAACCCTGCCCAGACGCCGGT‑GA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACTGTTCGACTGTCAGCGTc < 2:421458/149‑1 (MQ=11) ccTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa > 5:120098/1‑149 (MQ=37) cTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCCCCAt > 5:337644/1‑149 (MQ=37) | GGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGT‑GA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACG > NC_002947/196159‑196454 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |