| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 196,351 | C→G | 20.5% | T619T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,351 | 0 | C | G | 20.5% | 288.6 / 75.6 | 141 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (53/59); new base G (15/14); total (68/73) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.18e-01 | |||||||||||
Only 100 of 142 total aligned reads displayed.
GACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGG > NC_002947/196204‑196499 | gACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCa > 5:346577/1‑149 (MQ=39) aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCAt < 4:352517/149‑1 (MQ=39) aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCAt < 8:18104/149‑1 (MQ=39) aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCAt > 4:232056/1‑149 (MQ=39) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTa > 2:37404/1‑149 (MQ=39) cGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTAcc < 7:296084/149‑1 (MQ=39) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCg > 3:301423/1‑149 (MQ=39) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCg > 5:150050/1‑149 (MQ=39) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCg > 8:372667/1‑149 (MQ=39) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTg < 7:372667/148‑1 (MQ=39) aCGTCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAACGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGaa < 3:246927/149‑1 (MQ=255) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGaa < 6:105858/149‑1 (MQ=39) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGaa < 1:149546/149‑1 (MQ=39) aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGcc > 5:310270/1‑149 (MQ=39) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCg > 7:198758/1‑149 (MQ=39) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCg > 5:265151/1‑149 (MQ=39) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCg > 5:149319/1‑149 (MQ=39) ggTCGACACCACTACCGGGACGGTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGGCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTTGCGTTGAAGCCg < 8:166897/146‑1 (MQ=14) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGc > 2:331816/1‑148 (MQ=255) gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAAc < 1:277487/149‑1 (MQ=40) accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAAcc > 6:39114/1‑147 (MQ=38) accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAAcc > 5:161948/1‑147 (MQ=38) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGc < 3:292597/135‑1 (MQ=34) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCa < 8:393882/140‑1 (MQ=34) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg < 2:256393/149‑1 (MQ=17) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg > 4:344160/1‑149 (MQ=37) acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg < 7:92983/149‑1 (MQ=17) acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg < 3:126638/149‑1 (MQ=17) acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAggg < 8:301536/149‑1 (MQ=37) acTACCGCGACCATGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAggg > 6:423186/1‑149 (MQ=37) ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGc > 3:237856/1‑149 (MQ=34) cgACCCTGACGGCGAGCCCGTCAGTCACCGAAGGCGGTGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc < 2:433758/149‑1 (MQ=21) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGc < 4:71129/128‑1 (MQ=32) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGc > 3:71129/1‑128 (MQ=32) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGac > 7:153198/1‑148 (MQ=12) ccTGACGGCGAGCCCGTCGTTCACCGAAGGCGGCGTGATCACTTAAACCGTGACACTGACAAACCCTGCCCAGACGACGGTGA‑AAGTGAAACTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAACCCCAGGGCAGCGTCgcct > 6:137572/1‑146 (MQ=11) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGActt < 3:80466/149‑1 (MQ=255) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGActt > 7:58921/1‑149 (MQ=255) gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt < 6:280340/141‑1 (MQ=12) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 8:218008/148‑1 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 2:74891/148‑1 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 8:330991/148‑1 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc < 6:150050/147‑1 (MQ=34) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 2:56069/149‑1 (MQ=34) cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTTA‑CAGTGACCCTGTCCAGTCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 1:331816/148‑1 (MQ=255) cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 6:346577/148‑1 (MQ=34) ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGa > 5:360070/1‑149 (MQ=34) gCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAc < 8:37421/149‑1 (MQ=255) gCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg > 3:30464/1‑149 (MQ=34) cccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACGGTTGAAGCCGGCAACACCCAGGGCAGCGTCGATTTCCAGACCCCgg > 6:106893/1‑149 (MQ=17) ggTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt < 1:431955/148‑1 (MQ=34) ggTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAt < 1:113223/148‑1 (MQ=255) gTCACCGAAGGCGGCGTGATCACTTACACCGTGCCCCTGAGCACTCCTGCCCAGACGCCGGTGA‑CAGTGCCCCTGTCCA‑CCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa > 5:272241/1‑149 (MQ=255) gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa > 7:19727/1‑149 (MQ=34) tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTTAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAATCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc < 8:91688/149‑1 (MQ=11) tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 7:55011/149‑1 (MQ=34) tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc > 5:287083/1‑149 (MQ=255) aCCGAAGGCGGCGTGATCACTTACACCGTGTCCCTGAGCAATCCTGCCCAGACGCGGGTGACCAGT‑CCCGCGCCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGt < 1:142653/149‑1 (MQ=11) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCt < 7:163639/149‑1 (MQ=255) gcggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTacaa > 3:18715/1‑148 (MQ=255) cggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTacaac > 1:174480/1‑148 (MQ=255) cggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTAACGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTacaac > 7:282279/1‑148 (MQ=11) ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc > 8:237492/1‑121 (MQ=35) ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 7:237492/121‑1 (MQ=35) ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa < 6:265151/149‑1 (MQ=34) tGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCgg > 4:319105/1‑126 (MQ=255) acacCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt < 8:19727/148‑1 (MQ=34) acacCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt < 4:295017/148‑1 (MQ=34) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 6:154813/1‑148 (MQ=255) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt < 8:58921/148‑1 (MQ=255) cacCTTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAATCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa < 6:272241/149‑1 (MQ=21) cacCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa < 2:50638/149‑1 (MQ=34) gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgtgt > 7:111988/1‑149 (MQ=37) tGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt > 1:416789/1‑140 (MQ=33) tGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTc > 4:270513/1‑149 (MQ=37) tGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACTGTTCGACTGTCAGCGTc < 2:421458/149‑1 (MQ=11) aCCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCATGGCAGCGGCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa < 8:327923/148‑1 (MQ=255) ccTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa > 5:120098/1‑149 (MQ=37) cTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCCCCAt > 5:337644/1‑149 (MQ=37) aGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTAACCATCga > 1:292306/1‑149 (MQ=37) cAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCgaga < 4:30464/149‑1 (MQ=37) tCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACg > 6:165948/1‑149 (MQ=37) ccAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcg < 3:344160/149‑1 (MQ=38) aGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggc > 4:260646/1‑149 (MQ=39) aGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggc > 6:413400/1‑149 (MQ=39) gACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg < 3:232056/149‑1 (MQ=39) gCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCgag < 1:212032/133‑1 (MQ=37) gCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCgag > 2:212032/1‑133 (MQ=37) aGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg > 7:115284/1‑148 (MQ=38) aGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg > 7:392825/1‑148 (MQ=38) aCCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAAc < 5:39114/148‑1 (MQ=37) aCCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAAc < 5:413400/148‑1 (MQ=37) cccTGTCCA‑ACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAgg < 2:355868/48‑1 (MQ=255) tCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAcccc < 8:243845/149‑1 (MQ=37) cGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATc < 3:270513/149‑1 (MQ=38) gCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCg < 8:392825/149‑1 (MQ=39) ccAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGa > 3:333941/1‑149 (MQ=39) aaCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGc < 6:315912/149‑1 (MQ=39) aCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc > 6:167484/1‑46 (MQ=38) cATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCAGGCGAATGACGTCTACAACAACGCTTCGACTGTCAGAGTCAACATCGAGAACGCCACCGGCGGTAATTTACAGAAACATACCCCGAATCCGACGACgg > 8:383341/1‑149 (MQ=11) | GACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCA‑ACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGG > NC_002947/196204‑196499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |