Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,886,885 C→T 5.7% V1130I (GTA→ATA) ‡ PP_1695 ← sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,886,8850CT 5.7% 268.0 / 3.1 87V1130I (GTA→ATA) ‡PP_1695sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
Reads supporting (aligned to +/- strand):  ref base C (43/39);  new base T (2/3);  total (45/42)
Fisher's exact test for biased strand distribution p-value = 6.69e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.88e-01

GCAGACCTGCTGGAGCGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGTCCACCAATGCCAGGTGCGGGCGCATG  >  NC_002947/1886741‑1887033
                                                                                                                                                |                                                                                                                                                    
gCAGACCTGCTGGAGCGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGCTGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGCTGCATGTACCAgg                                                                                                                                                  >  7:395948/1‑149 (MQ=255)
 cAGACCTGCTGGAGCGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAggg                                                                                                                                                 <  3:325327/149‑1 (MQ=255)
   gACCTGCTGGAGCGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGGTACATGCATCAGGGct                                                                                                                                               <  4:23887/149‑2 (MQ=255)
    aCCTGCTGGAGCGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGa                                                                                                                                              >  2:53384/1‑149 (MQ=255)
     ccTGCTGGAGCGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGTGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGAt                                                                                                                                             >  5:246600/1‑149 (MQ=255)
     ccTGCTGGAGCGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGAt                                                                                                                                             <  4:46449/149‑1 (MQ=255)
         ctgGAGCGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGGTACATGCATCAGGGctggac                                                                                                                                           <  1:173933/147‑6 (MQ=255)
         ctgGAGCGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGtt                                                                                                                                         >  7:131998/1‑149 (MQ=255)
           ggAGCGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTc                                                                                                                                       >  3:63746/1‑149 (MQ=255)
             aGCGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGTTGCATGTACCAGGGCGATGGTTTCCt                                                                                                                                     <  7:107382/149‑1 (MQ=255)
             aGCGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCt                                                                                                                                     <  7:21893/149‑1 (MQ=255)
              gCGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCtt                                                                                                                                    <  8:45024/149‑1 (MQ=255)
               cGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTtg                                                                                                                                   <  6:134787/149‑1 (MQ=255)
               cGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTtg                                                                                                                                   >  7:289401/1‑149 (MQ=255)
                   cgcTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTTGCCAGGTAGTGCAGCCCTGATGCATGTACCAGGGCGATGGTTTcc                                                                                                                                      >  5:374563/1‑142 (MQ=255)
                   cgcTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTcc                                                                                                                                      <  6:374563/142‑1 (MQ=255)
                    gcTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGcc                                                                                                                              >  6:439799/1‑149 (MQ=255)
                    gcTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGcc                                                                                                                              <  6:199071/149‑1 (MQ=255)
                      tGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGt                                                                                                                            >  3:86245/1‑149 (MQ=255)
                          cGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCgg                                                                                                                         <  8:289401/148‑1 (MQ=255)
                          cGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCACAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGgc                                                                                                                        >  2:341585/1‑149 (MQ=255)
                               aGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGa                                                                                                                   <  8:249903/149‑1 (MQ=255)
                                ggCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGTAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGa                                                                                                                   >  7:3649/1‑148 (MQ=255)
                                 gcgcTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGAt                                                                                                                  >  6:275406/1‑148 (MQ=255)
                                 gcgcTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATc                                                                                                                 <  1:341585/149‑1 (MQ=255)
                                    cTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCAc                                                                                                               >  5:204998/1‑148 (MQ=255)
                                    cTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCAc                                                                                                               >  7:371428/1‑148 (MQ=255)
                                       cccGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTa                                                                                                             <  1:397050/147‑1 (MQ=255)
                                         cGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACAcc                                                                                                         <  8:222827/149‑1 (MQ=255)
                                          gAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGTAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCg                                                                                                        <  8:3649/149‑1 (MQ=255)
                                            ggTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCggg                                                                                                      <  5:439799/149‑1 (MQ=255)
                                              tAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTa                                                                                                    <  8:7334/149‑1 (MQ=255)
                                                   gTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGc                                                                                               <  1:53384/149‑1 (MQ=255)
                                                   gTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGc                                                                                               <  8:131998/149‑1 (MQ=255)
                                                       cTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCa                                                                                            <  1:106859/148‑1 (MQ=255)
                                                       cTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGAGCTGATCACTACACAGGGTCCCGGCTCAc                                                                                           >  5:100045/1‑149 (MQ=255)
                                                          aGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCAcc                                                                                          >  2:113736/1‑147 (MQ=255)
                                                            ccAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGc                                                                                      >  6:15109/1‑149 (MQ=255)
                                                             cAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGcc                                                                                     <  7:353134/149‑1 (MQ=255)
                                                              aGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCATCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCg                                                                                    <  6:246600/149‑1 (MQ=255)
                                                                  tCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCg                                                                                                        <  7:14353/125‑1 (MQ=255)
                                                                  tCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCg                                                                                                        >  8:14353/1‑125 (MQ=255)
                                                                    aGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCa                                                                                            <  4:211150/135‑1 (MQ=255)
                                                                    aGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCa                                                                                            >  3:211150/1‑135 (MQ=255)
                                                                      aTGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGaa                                                                            <  5:15109/149‑1 (MQ=255)
                                                                      aTGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGaa                                                                            <  1:333662/149‑1 (MQ=255)
                                                                          cGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAagcca                                                                        <  4:418069/149‑1 (MQ=255)
                                                                           gATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACAcc                                                                                                         >  4:291082/1‑115 (MQ=255)
                                                                           gATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACAcc                                                                                                         <  3:291082/115‑1 (MQ=255)
                                                                            aTTGTGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAagccagc                                                                      >  7:120449/1‑149 (MQ=255)
                                                                                 gCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCAt                                                                  >  4:253454/1‑148 (MQ=255)
                                                                                 gCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCAt                                                                  >  3:7807/1‑148 (MQ=255)
                                                                                 gCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCAt                                                                  >  1:55836/1‑148 (MQ=255)
                                                                                  cAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCAt                                                                  >  5:398787/1‑147 (MQ=255)
                                                                                  cAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCa                                                                <  1:428393/149‑1 (MQ=255)
                                                                                     ggCGCTCACGGCCGCAGGCTTGTCAGGTTTTGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCATcc                                                             <  6:100045/149‑1 (MQ=255)
                                                                                            aaGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGcc                                                      >  1:31851/1‑149 (MQ=255)
                                                                                             aGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCg                                                     <  3:385386/149‑1 (MQ=255)
                                                                                               gCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGt                                                   <  8:371428/149‑1 (MQ=255)
                                                                                                ccGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGtc                                                  >  1:145728/1‑149 (MQ=255)
                                                                                                ccGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGtc                                                  <  7:179890/149‑1 (MQ=255)
                                                                                                 cGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACACAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGACGGtct                                                 >  5:45520/1‑149 (MQ=255)
                                                                                                     ggCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGcc                                             <  6:204998/149‑1 (MQ=255)
                                                                                                        ttGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCcgtc                                          >  7:266329/1‑149 (MQ=255)
                                                                                                            ccGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTACCGGTCTCGCCgtcgtc                                       >  3:147950/1‑148 (MQ=255)
                                                                                                              ggTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTACCGGTCTCGCCGTCGTCCAg                                    <  4:147950/149‑1 (MQ=255)
                                                                                                                  tGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAggtgg                                >  5:275086/1‑149 (MQ=255)
                                                                                                                   ggCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAggtgg                                <  4:7807/148‑1 (MQ=255)
                                                                                                                      cAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGt                            >  7:237477/1‑149 (MQ=255)
                                                                                                                      cAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGt                            >  5:283451/1‑149 (MQ=255)
                                                                                                                         gTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGTcca                         >  4:88748/1‑149 (MQ=255)
                                                                                                                          tAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGTccac                        <  8:266329/149‑1 (MQ=255)
                                                                                                                            gTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGTccacc                       >  6:413935/1‑148 (MQ=255)
                                                                                                                            gTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCGCGCCGTCGTCCAGGTGGTAGTccacc                       >  6:338416/1‑148 (MQ=255)
                                                                                                                             tCCACCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCAGTCGGCGCTGATCACTACACAAGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGTCCACCaa                     >  1:131740/1‑149 (MQ=255)
                                                                                                                             catcgCCCTGGTACATGCATCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGTCCACCaa                     >  7:375935/5‑149 (MQ=255)
                                                                                                                              atcgCCCTGGTACATGCATCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGccc                                                            >  7:342460/4‑109 (MQ=255)
                                                                                                                              atcgCCCTGGTACATGCATCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGccc                                                            <  8:342460/106‑1 (MQ=255)
                                                                                                                               cAGCCCTGATGCATGTCCCACGGCGATGCTTTCATTGCTGCCGTCGGCGCTGATACCTTCACCGGGTACCGGCTCACCCTGCCGAGGTCGAAGCCAGCCCATGCGCCCGGTGCCGGGCTCGCCGTCGTCCAGCTGGTAGTccccaaaag                   >  2:319046/1‑142 (MQ=255)
                                                                                                                                  cccTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCcgtcg                                         >  2:408309/1‑124 (MQ=255)
                                                                                                                                  cccTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCcgtcg                                         <  1:408309/124‑1 (MQ=255)
                                                                                                                                  cccTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGTCCACCAATGCCa                <  4:86245/149‑1 (MQ=255)
                                                                                                                                  cccAGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACAGGGTACCGGCTCACCCAGCCGTGCTCCAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGTCCACCAATGc                  >  8:279280/1‑147 (MQ=255)
                                                                                                                                       aTGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGTCCACCAATGCCAGGTGc           <  8:237477/149‑1 (MQ=255)
                                                                                                                                       aTGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGTCCACCAATGCCAGGTGc           >  7:249839/1‑149 (MQ=255)
                                                                                                                                            tGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGACGGTCTCGCCGTCGTCCAGGTGGTAGTCCACCAATGCCAGGTGCGGgcg      >  7:325650/1‑149 (MQ=255)
                                                                                                                                               aCCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCAGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGTCCACCAATGCCAGTTGCGGGCGCAt   >  8:344691/1‑149 (MQ=255)
                                                                                                                                                ccAGGGCGATGGTTTGCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGTCCACCAATGCCAGGTGCGGGCGCAt   <  1:226834/148‑1 (MQ=255)
                                                                                                                                                ccAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGTCCACCAATGCCAGGTGCGGGCGCAt   <  8:249839/148‑1 (MQ=255)
                                                                                                                                                ccAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGAGCCGCTCTCGCCGTCGTCCAGGTGGTAGTCCACCAATGCCAGGTGCGGGCGCATg  >  7:145489/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
GCAGACCTGCTGGAGCGGGCGCTGTCCGATGAGGCGCTGCCCGAGGTAGCGGTTACTGAGCCAGGCTCAGATGGCGATTGAGCAGGGCGCGCAAGGCCGCAGGCTTGACCGGTTTGGCCAGGTAGTCCAGCCCTGATGCATGTACCAGGGCGATGGTTTCCTTGCTGCCGTCGGCGCTGATCACTACACCGGGTACCGGCTCACCCAGCCGTGCTCGAAGCCAGCCCATCAGCCCGGTGCCGGTCTCGCCGTCGTCCAGGTGGTAGTCCACCAATGCCAGGTGCGGGCGCATG  >  NC_002947/1886741‑1887033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: