| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,089 | T→C | 19.7% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,089 | 0 | T | C | 19.7% | 796.0 / 188.0 | 412 | N865N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (161/162); new base C (42/37); total (210/202) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.18e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.21e-01 | |||||||||||
Only 100 of 417 total aligned reads displayed.
ACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGT > NC_002947/196941‑197237 | aCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGNCGGTAATTTCGAGCAACTGACCCCGAAt > 4:3708/1‑149 (MQ=17) ggCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc < 1:193995/149‑1 (MQ=34) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc < 4:428340/149‑1 (MQ=34) aaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAccc > 2:399281/1‑149 (MQ=35) aCCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTc < 1:223703/148‑1 (MQ=37) cGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGa < 2:211542/149‑1 (MQ=37) cGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGa < 4:34018/149‑1 (MQ=37) cGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGa < 1:157118/149‑1 (MQ=37) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACTGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGAc > 3:138388/1‑148 (MQ=37) gAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCAc > 4:216379/1‑149 (MQ=37) aaGCCGGCAAGACCCAGGGCAGAGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTAAGCGACAACAACGAGAACGCCCCAGGCCGTAATTTCGAGCAACTGACCCCGAAACCGCCCCC‑‑GACTCAGACCAc > 8:385024/1‑148 (MQ=11) cGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACACCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATc < 6:109094/148‑1 (MQ=37) ggCAAGACCCAGGGCAGCGTCGATTTCCAGCCCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACAACGATCaa > 7:132354/1‑149 (MQ=255) ggCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCCCGATCaa > 4:117812/1‑149 (MQ=37) aaGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGa < 3:51391/149‑1 (MQ=37) gccccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACCTCTACAACAACGGTTCGACCGTCAGCGGCTCCATCGAGCACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACt < 2:71581/147‑1 (MQ=255) cccAGGGCAGCGTCGATTTCCAGACCCCGTCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GCCTCAGACCACGATCAACGACTCg < 5:224326/149‑1 (MQ=21) cccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCg < 2:261822/149‑1 (MQ=34) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTc > 4:245816/1‑149 (MQ=34) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTc > 6:440551/1‑149 (MQ=34) gCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCAc > 3:421483/1‑127 (MQ=35) gCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGcc < 3:245816/149‑1 (MQ=38) cGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGcca > 3:326062/1‑149 (MQ=38) tagATTTCCAGACCCCGGCGAATGACGGCTTCTACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGGAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGccacc < 8:132354/147‑1 (MQ=255) cGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGccacca > 6:257973/1‑149 (MQ=39) aTTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAAc < 2:368133/128‑1 (MQ=35) aTTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGACAGCGACACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGCCCCC‑‑GGCTCAGACCACGATCAACGACTCGCTCGATGACaccacc > 6:313577/1‑149 (MQ=14) tCCAGACCCCGGCGAATGACGTCTACAACATCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgc > 1:36501/1‑148 (MQ=255) ccAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGa > 3:385591/1‑149 (MQ=39) ccAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGa > 7:256595/1‑149 (MQ=39) cAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGa < 6:370911/148‑1 (MQ=39) cAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCGCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGa > 5:370911/1‑148 (MQ=255) cAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACACGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑CGCTCAGACCACCATCAAAGACTCGGTCGATGCCACCACCGCAAc > 4:3863/1‑149 (MQ=14) aGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc < 5:317514/149‑1 (MQ=39) aGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc > 4:8388/1‑149 (MQ=39) aCCCCCGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCA‑‑GGCTCAGACCACGATCAACGACTCGGTCTATTCCACCACCGCGACCCt < 4:315558/149‑1 (MQ=255) cccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATTCCACCACCGCGACCCTGa > 7:175692/1‑149 (MQ=37) cccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCAAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGa > 1:103509/1‑149 (MQ=255) cGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCg < 4:18715/149‑1 (MQ=21) gACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGc < 3:202004/147‑1 (MQ=21) gACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGc > 4:208872/1‑147 (MQ=21) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGc < 8:364449/142‑1 (MQ=37) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCAc < 2:81446/98‑1 (MQ=33) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTc > 8:242930/1‑149 (MQ=37) tCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg < 1:243094/149‑1 (MQ=37) cTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCgg > 3:71561/1‑149 (MQ=37) tACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGt > 1:335216/1‑149 (MQ=37) aacaacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 6:151936/1‑149 (MQ=21) aacaacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 6:34070/1‑149 (MQ=21) aacaacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 6:27810/1‑149 (MQ=21) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 4:411192/1‑148 (MQ=37) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 3:158624/1‑148 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 5:138635/1‑147 (MQ=37) acGGTCCGACCGTCAGCTTCACCATGCACAACGCCACTGGCGGTAATTTCTAGCACCTTACCCCGAATCCGCCCCCTATGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg < 1:135840/149‑1 (MQ=11) gTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg < 5:282523/144‑1 (MQ=21) ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcg > 2:433065/1‑113 (MQ=39) ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 1:75795/149‑1 (MQ=37) tCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcgg > 7:199837/1‑149 (MQ=37) cGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGATCAACTGACCCCGAATCCGACCCC‑‑GGCTCATACCACGATCAACGACTCGGTCGATTCCACCACCGCGACCCTGACGGCGCGCCCGTCGGTCACCGAAggcgg < 7:272081/148‑1 (MQ=255) gACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 5:151936/148‑1 (MQ=21) gACTGTCAGCGTCACCAGCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 1:407883/148‑1 (MQ=255) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 4:67158/148‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 3:294067/148‑1 (MQ=37) aCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 3:8388/149‑1 (MQ=37) cGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTaa < 2:335216/149‑1 (MQ=38) cGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAGCCGACCCC‑‑GGCTCa > 8:273444/1‑72 (MQ=25) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAt > 5:265917/1‑148 (MQ=39) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAcc < 3:119712/149‑1 (MQ=38) cGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCt < 4:144221/149‑1 (MQ=38) cGTCACCATCGAGAACGCCACAGGCGGTAATTTCGACCACCTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGAt < 4:164953/91‑1 (MQ=255) aCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTacac > 7:69852/1‑149 (MQ=37) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACAcc < 3:173624/149‑1 (MQ=37) ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACAcc > 2:189959/1‑149 (MQ=37) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAAAGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCg > 7:9404/1‑149 (MQ=255) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGCCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGt > 7:399871/1‑149 (MQ=37) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCgg > 8:61209/1‑115 (MQ=35) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc < 6:213792/149‑1 (MQ=37) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc < 2:103509/149‑1 (MQ=37) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc > 3:351145/1‑149 (MQ=17) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCt < 8:199837/149‑1 (MQ=37) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCGCAGACCACGAACAACCACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGCCCCt > 6:427844/1‑149 (MQ=255) actccACAGGCTGTAATTTCTAGCAACTGACCCCTAATCCGACCCA‑‑GTCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCTTGACCCTg < 7:385024/146‑1 (MQ=11) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 5:60568/149‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 1:167799/149‑1 (MQ=37) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc < 7:108206/38‑1 (MQ=40) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc > 8:108206/1‑38 (MQ=40) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAg > 1:472/1‑149 (MQ=37) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAg > 5:172385/1‑149 (MQ=37) ccACAGGCGGTAGTTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGc < 5:408557/149‑1 (MQ=37) aGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATc < 1:427243/149‑1 (MQ=25) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCt < 7:332079/149‑1 (MQ=34) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGc > 7:218386/1‑149 (MQ=34) gTAATTTCGAGCAACTGACCCCGAATCCGCCCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc < 1:300243/149‑1 (MQ=21) tttCGAGCAACTGACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCAATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGa < 2:151511/149‑1 (MQ=21) tCGAGCAACTAACCCCGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGAc < 2:296084/148‑1 (MQ=21) cGAGCAACTGACCCCGAACCCGCCCCC‑‑GGCTCCGACCACGATCCCCGACTCGGTCGATGCCCCCCCCGCGCCCCTGACGGCGAGCCCGTCGGTCACCGCAGGCGGCGTACTCACCTCCACCGTGACCCTCAGCAATCCTGACCCGACGc > 6:396837/1‑149 (MQ=11) aCCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCTGTGAca < 5:11152/147‑2 (MQ=14) cccGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa < 8:206625/149‑1 (MQ=39) cccGAACCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAAt < 6:81951/124‑1 (MQ=17) tCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGt < 6:138635/149‑1 (MQ=38) | ACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCC‑‑GGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGT > NC_002947/196941‑197237 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |