| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,892,526 | C→G | 6.3% | intergenic (+36/‑59) | PP_1697 → / → PP_1698 | transcriptional regulator, GntR family/MFS transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,892,526 | 0 | C | G | 6.3% | 297.3 / 7.2 | 93 | intergenic (+36/‑59) | PP_1697/PP_1698 | transcriptional regulator, GntR family/MFS transporter |
| Reads supporting (aligned to +/- strand): ref base C (40/47); new base G (2/4); total (42/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01 | |||||||||||
CCCGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGGCGGCTGGTCGCTCGATGCGCTGGAA > NC_002947/1892379‑1892671 | cccGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGGTCGGGGGGCCATTCGCATCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGTCCTCTTCACCCTTCACCTGTCTGCGCCGtgc < 1:39833/149‑1 (MQ=255)cccGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGtgct < 8:328316/149‑1 (MQ=255)cccGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTACACCTGTCTGCGCCGtgc > 2:39833/1‑148 (MQ=255) ggtggtCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGcc < 7:85586/149‑1 (MQ=255) ggtggtCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCGTCCCCTGTCTGCGCCGtgctgc > 1:268247/1‑148 (MQ=255) ggtCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACg > 6:355982/1‑149 (MQ=255) gtCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACgg < 7:161332/149‑1 (MQ=255) gtCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACgg < 2:236685/149‑1 (MQ=255) tCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGgc > 1:241714/1‑149 (MQ=255) cGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGgcg > 2:96688/1‑149 (MQ=255) gTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGgcgc < 3:102101/149‑1 (MQ=255) tGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGGCAGCACGGCGCa < 3:282092/149‑1 (MQ=255) tGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGGCAGCACGGCGCa < 3:207029/149‑1 (MQ=255) gATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCCCCTGTCTGCGCCGTGCTGCCACGGCGCAg > 5:412893/1‑149 (MQ=255) gATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAg > 5:225622/1‑149 (MQ=255) gATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAg > 5:434879/1‑149 (MQ=255) tCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGGCAGCACGGCGCAgac < 8:14334/149‑3 (MQ=255) tCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGGCAGCACGGCGCAgac < 7:80394/149‑3 (MQ=255) cGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTgg > 5:149994/1‑149 (MQ=255) cGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTgg > 8:194438/1‑149 (MQ=255) gAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCGACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTTTCTGCGCCGTGCTGCCACGGCGCAGGGGc > 4:171278/1‑149 (MQ=255) aGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCt > 7:52041/1‑149 (MQ=255) gCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCt < 3:27297/147‑1 (MQ=255) gCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGc > 8:217049/1‑149 (MQ=255) ccGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGccc > 4:38092/1‑149 (MQ=255) cgATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTc < 6:259264/149‑1 (MQ=255) gATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACCTTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTca < 7:89497/149‑1 (MQ=255) aCGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGG‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACAcc > 8:167992/1‑149 (MQ=255) gCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCa > 7:229349/1‑149 (MQ=255) cGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTTCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCAc > 4:285257/1‑148 (MQ=255) aaaCCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGAc > 5:210143/1‑147 (MQ=255) aaaCCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGAc > 6:426891/1‑147 (MQ=255) aaCCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAg < 3:342959/149‑1 (MQ=255) aCCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTTCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGa < 3:285257/149‑1 (MQ=255) ccTCTTGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTGCCGCTACCGCAT‑CGACATTCGTTAAACCGGG‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGaa < 3:171278/149‑1 (MQ=255) tctGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGAATGCGCCGTGCTGCCACGGCGCAGTGGGTTCGCCAGCCCGTCACACCCACGAATAGAAg > 7:273600/1‑148 (MQ=255) ctGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGa > 2:84421/1‑149 (MQ=255) tGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAgg < 6:312186/147‑1 (MQ=255) ggAATGTCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGAt > 6:211375/1‑148 (MQ=255) gAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATGCGCCATTCGTTAAACCGGG‑GGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGt > 1:95902/1‑127 (MQ=255) gAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGt < 2:95902/126‑1 (MQ=255) gAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATaa < 3:218358/149‑1 (MQ=255) gAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATaa > 5:338376/1‑149 (MQ=255) aTGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGc < 7:285862/120‑1 (MQ=255) aTGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGc > 8:285862/1‑120 (MQ=255) gcgcCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATc < 3:38092/149‑1 (MQ=255) gcgcCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATc < 8:52041/149‑1 (MQ=255) gcTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGtt < 8:229349/149‑1 (MQ=255) atctggaggCCATGCGCAGCACTTCCGCTACCTCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGTCTTCGCCTGCCCTTCACACCCACGACTAGAAGGATAACAATCATGtt < 1:155590/141‑1 (MQ=255) gcgGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTg < 7:217049/149‑1 (MQ=255) cgGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTgg < 6:338376/149‑1 (MQ=255) aTGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATcg > 2:144578/1‑149 (MQ=255) cgcAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATcg‑cg < 5:426891/148‑1 (MQ=255) cgcAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑Cga < 5:211375/149‑1 (MQ=255) cagcaCTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑Cgaga < 2:241714/149‑1 (MQ=255) agcaCTTCCGCTACCGCAT‑CGACAATCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGCCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATTACAATCATGTTCAGCTGGTATcg‑c > 7:266438/1‑144 (MQ=255) gcaCTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGAt > 1:313191/1‑148 (MQ=255) gcaCTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGAt > 6:307936/1‑148 (MQ=255) caCTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGaa > 1:390442/1‑113 (MQ=255) caCTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGaa < 2:390442/113‑1 (MQ=255) ccGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTcc > 4:7169/1‑148 (MQ=255) cTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACgg < 2:3832/149‑1 (MQ=255) ccGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGaa > 4:369941/1‑149 (MQ=255) cGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAAc < 6:210143/149‑1 (MQ=255) cGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAAc < 6:434879/149‑1 (MQ=255) t‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGc > 5:274711/1‑147 (MQ=255) t‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCaa < 6:395640/149‑1 (MQ=255) cGTTAAACCGGC‑CGCTGCCCCCTTCACCTGTCTGCGCCGAGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTc < 4:264976/148‑1 (MQ=255) gTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCCGAGATCACCTCACGGGAACGCAAGACATTCt < 1:46166/149‑1 (MQ=255) ttAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTgg < 3:412744/149‑1 (MQ=255) ttAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTgg < 1:144578/149‑1 (MQ=255) aaaCCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGc > 1:156034/1‑149 (MQ=255) aaCCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGc < 1:96688/148‑1 (MQ=255) aaCCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGc < 6:225622/148‑1 (MQ=255) cGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGt > 6:296229/1‑149 (MQ=255) t‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTc < 5:296229/149‑1 (MQ=255) cttcacccttcaccTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTcggc < 6:274711/149‑1 (MQ=255) ttcacccttcaccTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTcggcg > 6:204559/1‑149 (MQ=255) acccttcaccTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGGCGGCt < 6:412893/149‑1 (MQ=255) cccttcaccTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGGCGGCTg < 5:307936/149‑1 (MQ=255) cccttcaccTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGGCGGCTg > 7:76745/1‑149 (MQ=255) ccttcaccTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGTAGCATAACTATCATGTTCAGCTGGTATCG‑CGAGATCCACTCACGGGACCGCAAGACATTCTGGGCCTCTTTCGGCGGCTgg > 5:115998/1‑149 (MQ=255) ccttcaccTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGGCGGCTgg > 6:195198/1‑149 (MQ=255) cttcaccTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGGCGGCTGGt < 5:355982/149‑1 (MQ=255) caccTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGGCGGCTGGTc < 3:293985/147‑1 (MQ=255) ccTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGGCGGCTGGTCGCTc < 4:408240/149‑1 (MQ=255) gTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACg > 4:7493/1‑109 (MQ=255) gTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACg < 3:7493/109‑1 (MQ=255) gTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGGCGGCTGGTCGCTCGAt < 8:273600/149‑1 (MQ=255) gTCTGCGCCGTGCTGCCACGGCGCAGTGGCTGCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAAGCCTGTGCCGCTGGTATCG‑CGAGATCACCTCACGGGACCGCAAGACATGCTGGGCCTGTTTCGGCGGCTGGTCGCTCGAt < 2:268247/149‑1 (MQ=255) acTGCGCCGTGGCAGCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGGCGGCTGGTCGCTCGATg > 8:260221/2‑149 (MQ=255) tGCGCCGTGGCATCACGGCGCAGTCGCTTCGCCTGCCCGTCACACCCACGACTAGAACGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGACCGCAAGACATTCTGGGCCAGTTTCGTCGGCTGGTCGCTCGATgag > 4:328343/1‑147 (MQ=255) tGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGCCATTCTGGGCCTGTTTCGGCGGCTGGTCGCTCGATgcg > 2:377392/1‑149 (MQ=255) cgcCGTGCTGCCAGTGCGCAGGGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CTAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGGCGGCTGGTCGCTCGATgc < 6:236589/146‑1 (MQ=255) cgcCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCCGCGGCTGGTCGCTCGATgc < 1:84421/146‑1 (MQ=255) gTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGGCGGCTGGTCGCTCGATGCGCTgg > 6:317561/1‑147 (MQ=255) gTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGGCGGCTGGTCGCTCGATGCGCTGGaa < 3:369941/149‑1 (MQ=255) | CCCGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCAT‑CGACATTCGTTAAACCGGT‑CGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCG‑CGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGGCGGCTGGTCGCTCGATGCGCTGGAA > NC_002947/1892379‑1892671 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |