| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,987,993 | G→C | 6.5% | V153L (GTC→CTC) ‡ | PP_1779 → | lipopolysaccharide ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,987,993 | 0 | G | C | 6.5% | 240.8 / 6.3 | 77 | V153L (GTC→CTC) ‡ | PP_1779 | lipopolysaccharide ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base G (35/37); new base C (3/2); total (38/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.58e-01 | |||||||||||
CGCCAGAACGTGTACCACGCTGCGGGTCTGATGGGTTTCGATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCTGGGAACATCGCTTTTGATAGTGT > NC_002947/1987846‑1988137 | cgccTGAACGTGTACCACGCTGCGGGTCTGATGGGTTTCGATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTTCTTTGATGAGTCAGTGCGTACCTATTCCAGCGTTATGCAAATGcgcg < 3:401255/148‑1 (MQ=255)cgccAGAACGTGTACAACGCTGCGGGTCTGATGGGTTTCGATGTACCGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGt > 2:263935/1‑149 (MQ=255) aaCGTGTACCACGCTGCGGGTCTGATGGGTTTCGATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCAtt < 8:252158/149‑1 (MQ=255) tgtACCACGCTGCGGGTCTGATGGGTTTCGATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGACGCGCATTTGca < 3:240512/149‑2 (MQ=255) tACCACGCTGCGGGTCTGATGGGTTTCGATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGt > 5:327816/1‑149 (MQ=255) tGCGGGTCTGATGGGTTTCGATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTg < 4:56948/149‑1 (MQ=255) tGGGTTTCGATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCTTTCCGTcc < 6:38738/148‑1 (MQ=255) gggTTTCGATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTc > 7:126161/1‑146 (MQ=255) gTTTCGATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAg < 8:116924/147‑1 (MQ=255) gTTTCGATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAg > 7:116924/1‑147 (MQ=255) tttCGATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGaaa > 1:29988/1‑149 (MQ=255) tttCGATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGaa > 6:58003/1‑148 (MQ=255) ttCGATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAAt > 5:29491/1‑149 (MQ=255) gATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATcc < 5:58003/148‑1 (MQ=255) gATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATcc < 8:204190/148‑1 (MQ=255) gATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCt > 3:345755/1‑149 (MQ=255) tGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTa < 1:53692/149‑1 (MQ=255) tGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTa < 2:62098/149‑1 (MQ=255) aCAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGCGGCGACTGCGTTCCGTCCAGAAATCCTTAtcg > 6:119820/1‑149 (MQ=255) gcagATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTAtcgtc > 8:278505/1‑148 (MQ=255) cagATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGa > 1:396899/1‑149 (MQ=255) aTCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGAt > 7:338395/1‑147 (MQ=255) aTCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGa < 6:81865/149‑1 (MQ=255) tgTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGt < 6:29491/149‑1 (MQ=255) tgTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAAAGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGt < 3:9825/149‑1 (MQ=255) tgaCATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAggg > 2:21284/1‑148 (MQ=255) tgaCATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAggg < 4:117273/148‑1 (MQ=255) tgaCATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAggg < 4:3287/148‑1 (MQ=255) tgaCATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCAGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAggg > 1:349341/1‑148 (MQ=255) gaCATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGa > 4:158255/1‑149 (MQ=255) aCATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGa < 8:126161/148‑1 (MQ=255) aCATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGAc < 8:338395/149‑1 (MQ=255) cATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACa < 6:327816/149‑1 (MQ=255) cATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCACTGTCAGTAGGGGa > 5:330724/1‑147 (MQ=255) aTTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGACGCGCATTTGcatac < 3:3577/90‑5 (MQ=38) aTTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGACGCGCATTTGcatac > 4:3577/1‑86 (MQ=38) ttGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGc < 2:29988/149‑1 (MQ=255) aaGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTAt > 1:154532/1‑149 (MQ=255) aaGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTAt > 2:71657/1‑149 (MQ=255) aGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTAtt < 1:437212/149‑1 (MQ=255) gCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTAttt > 1:115838/1‑149 (MQ=255) ccTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCTTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTc < 5:285814/149‑1 (MQ=255) ccTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTc < 8:251261/149‑1 (MQ=255) cTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTc > 4:21145/1‑148 (MQ=255) gCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGc < 2:396899/148‑1 (MQ=255) cGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCa < 1:167386/124‑1 (MQ=255) cGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCa > 2:167386/1‑124 (MQ=255) cGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGcac > 1:67374/1‑148 (MQ=255) tGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGt < 2:349341/148‑1 (MQ=255) gCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGtttt < 4:345755/149‑1 (MQ=255) gAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGtttt > 6:42255/1‑147 (MQ=255) gAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGa < 5:83423/149‑1 (MQ=255) gAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGa < 7:278505/149‑1 (MQ=255) gTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAgc < 5:42255/149‑1 (MQ=255) tACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAgcg > 7:101746/1‑149 (MQ=255) cTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCa > 8:84707/1‑149 (MQ=255) tttGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCAt > 8:293914/1‑149 (MQ=255) tgatgaGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCAt < 2:115838/147‑1 (MQ=255) atgaGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGt > 6:278439/1‑149 (MQ=255) tgaGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGt < 7:84707/148‑1 (MQ=255) gaGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAg < 6:166923/138‑1 (MQ=255) gaGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAg > 5:166923/1‑138 (MQ=255) cAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGTGAGTTc < 2:155488/149‑1 (MQ=255) ccTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCt < 1:21284/148‑1 (MQ=255) cTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCGTTATCGTCGATGAGGCGCTGTCAGTAGGGGAGAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCAGAGAGTTCAAGCGGCTgg > 8:101107/1‑149 (MQ=255) cTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCTgg > 5:177110/1‑149 (MQ=255) cTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCTgg > 8:236805/1‑149 (MQ=255) cTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTACAGCACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCTgg > 3:362406/1‑149 (MQ=255) ttCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCTGGGa < 2:154532/148‑1 (MQ=255) ccAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCTGGGAAc < 5:278439/148‑1 (MQ=255) aGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCTGGGAACATc < 7:236805/149‑1 (MQ=255) tGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCTGGGAACATCGCtttt < 6:325500/148‑1 (MQ=255) ggCAAATGCGACGCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCTGGGAACATCGCtttt > 1:389238/2‑148 (MQ=255) cAAATGCGACGCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCTGGGAACATCGCTTTTGa > 7:40396/1‑148 (MQ=255) aaaTGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCTGGGAACATCGCTTTTGATa > 8:173472/1‑149 (MQ=255) aaaTGCGCGTCGCATTTGCCGTGGAGACTGCGTTCCGTCCAGAAATACTTATCGTCGATGAGGCGCTGTCAGTTGGGGACAGCTATTTCCAGAACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCTGGGAACATCGCTTTTGa > 6:400740/1‑147 (MQ=255) aaaTGCGCGTAGCATTTGCCGTGGCGACTGCGTTCAGTCCAGAAAACCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGATTAGAGCGAAAACGTCAGTTCCAGCGGCTGGGAACATCGCTTTTGa > 3:96192/1‑147 (MQ=255) aTGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCTGGGAACATCGCTTTTGATAgt < 3:21145/149‑1 (MQ=255) cgcgTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCTGGGAACATCGCTTTTGATAgtgt < 7:173472/148‑1 (MQ=255) | CGCCAGAACGTGTACCACGCTGCGGGTCTGATGGGTTTCGATGTACAGCAGATCAATGATGTCATTGATGACATTGAAGCCTTTGCCGAGATTGGCGAGTACTTTGATGAGGCAGTGCGTACCTATTCCAGCGGTATGCAAATGCGCGTCGCATTTGCCGTGGCGACTGCGTTCCGTCCAGAAATCCTTATCGTCGATGAGGCGCTGTCAGTAGGGGACAGCTATTTCCAGCACAAGAGTTTTGAGCGCATCCGTGAGTTCCAGCGGCTGGGAACATCGCTTTTGATAGTGT > NC_002947/1987846‑1988137 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |