| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,052,786 | A→C | 6.0% | intergenic (+18/+32) | prmB → / ← PP_1828 | N5‑glutamine S‑adenosyl‑L‑methionine‑dependent methyltransferase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,052,786 | 0 | A | C | 6.0% | 250.1 / 4.1 | 82 | intergenic (+18/+32) | prmB/PP_1828 | N5‑glutamine S‑adenosyl‑L‑methionine‑dependent methyltransferase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (37/39); new base C (3/2); total (41/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCGAGGCGTTGTACCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCA > NC_002947/2052644‑2052932 | tCGAGGCGTTGTACCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCTTCGCGGcc > 1:425559/1‑149 (MQ=255)gcGATGCGTTGTACCCCGAGGGGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTGATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGcc < 2:115484/148‑1 (MQ=255) aGGCGTTGTACCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGCAATGGGGTGTGC‑TGGTTACCGGCGGCGAGTTCCGGCAGGATGATGGAATTG‑TGAAGGCCCGGCGTTTAGGGTTTTTGGGGCCGCAAGCCGGcct > 1:336400/1‑147 (MQ=255) cGTTGTACCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAAtt < 2:267869/149‑1 (MQ=255) gTTGTACCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCTTCGCGGCCCCaaata < 2:425559/149‑4 (MQ=255) gTTGTACCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAAttt > 2:200486/1‑149 (MQ=255) ttGTACCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTc < 2:126647/149‑1 (MQ=255) ttGTACCCCGAGGTGGACTATGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTc < 5:182234/149‑1 (MQ=255) gTACCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTAGGGCCGCTTCGCGGCCCCaaatagc < 7:100317/148‑6 (MQ=255) aCCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTccccc > 7:154902/1‑149 (MQ=255) ccGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGc < 1:201756/149‑1 (MQ=255) ccGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGc > 8:23457/1‑149 (MQ=255) cGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCt < 5:21744/149‑1 (MQ=255) gTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATg < 5:358442/149‑1 (MQ=255) gACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCg < 1:200486/148‑1 (MQ=255) cTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTc > 6:83435/1‑149 (MQ=255) ccTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGc < 1:239924/149‑1 (MQ=255) ccTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGc < 8:154902/149‑1 (MQ=255) tggctggAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTAGGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCgg > 4:411124/1‑149 (MQ=255) tggAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAg > 6:196110/1‑149 (MQ=255) tggAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCACTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAg > 6:80202/1‑149 (MQ=255) ggAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAg > 1:378288/1‑148 (MQ=255) gAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAg < 1:219918/147‑1 (MQ=255) tCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATc > 8:100367/1‑148 (MQ=255) gAGCGGGGCGGGC‑ATGGGGTGTTCATGCTGACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCa < 7:14213/148‑1 (MQ=255) gAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATc > 8:14213/1‑146 (MQ=255) gcggggcgggC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGAt < 5:398583/149‑1 (MQ=255) gcgggc‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTAGGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACa < 3:411124/149‑1 (MQ=255) cgggc‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAg < 5:196110/149‑1 (MQ=255) gggTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCACATCAACAGCcctgcct > 1:394268/1‑149 (MQ=255) gtgtTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTgg < 2:336400/149‑1 (MQ=255) gtTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCATAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGaa > 6:135440/1‑149 (MQ=255) cATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAaca < 6:185911/148‑1 (MQ=255) gCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACgg > 8:227519/1‑148 (MQ=255) cACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCaa‑‑a > 4:54613/1‑149 (MQ=255) aCCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCaa‑‑a < 2:378288/148‑1 (MQ=255) cgccgAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACg > 2:57935/1‑141 (MQ=255) cgccgAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACg < 1:57935/141‑1 (MQ=255) ccgAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGcca < 2:394268/149‑1 (MQ=255) cgAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGccac > 3:68078/1‑149 (MQ=255) gTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACa < 7:239397/115‑1 (MQ=255) gTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACa > 8:239397/1‑115 (MQ=255) gTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACcaggca < 2:208253/149‑1 (MQ=255) gTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGCCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGCCTGATGTGGTCTAAGCGGGTAGCAATCCACATCAACACCCCTCCCTGCAACCCGGCAA‑‑ACGACAAcaggca > 2:125982/1‑149 (MQ=255) gccAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATg > 7:74616/1‑79 (MQ=255) gccAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATg < 8:74616/79‑1 (MQ=255) gCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGt > 5:211207/1‑149 (MQ=255) tCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGa > 8:319431/1‑148 (MQ=255) a‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGaaa < 6:211207/148‑1 (MQ=255) a‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAAc > 3:213629/1‑149 (MQ=255) ggAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACg > 8:95507/1‑149 (MQ=255) ggAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACg > 6:390527/1‑149 (MQ=255) aaTTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGc > 5:421572/1‑148 (MQ=255) ttGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAAt > 4:118951/1‑149 (MQ=255) gTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATc < 5:83435/148‑1 (MQ=255) ttCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATccg > 4:333893/1‑149 (MQ=255) tCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATccgc > 7:188516/1‑149 (MQ=255) aaGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATccgccg < 7:100367/149‑1 (MQ=255) aaGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATccgcc < 7:23457/148‑1 (MQ=255) cc‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGaa > 2:210641/1‑131 (MQ=255) cc‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGaa < 1:210641/131‑1 (MQ=255) cc‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTc > 7:1225/1‑149 (MQ=255) gTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTcgc < 7:227519/147‑1 (MQ=255) gTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCgcgc < 8:1225/149‑1 (MQ=255) tAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTg < 5:390527/148‑1 (MQ=255) gCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTAt > 1:17302/1‑149 (MQ=255) tATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTAttt > 3:199305/1‑149 (MQ=255) tttGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACATCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTAttt < 5:315839/147‑1 (MQ=255) tttGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACATCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTAttt < 5:80202/147‑1 (MQ=255) ttagggCCGCTTCGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGc > 2:275304/4‑149 (MQ=255) tagggCCGCTTCGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGc > 1:208568/3‑148 (MQ=255) ggggCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCATGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTa > 3:128266/1‑149 (MQ=255) gggCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTAc < 7:95507/149‑1 (MQ=255) ccGCGAAGCGGCCCTAATTTCCCCCGGCTGATGTGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAACCACGCCACCAGGCAGGTATTGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTAcg < 1:125982/149‑1 (MQ=255) ccGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTAcgcg < 3:54613/149‑1 (MQ=255) ccGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTAcgcg < 2:17302/149‑1 (MQ=255) gcgAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCt > 3:267100/1‑149 (MQ=255) gcgAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCt > 8:188999/1‑149 (MQ=255) cgAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCt > 6:127282/1‑148 (MQ=255) gAAGCGGCCCTAATTTCCCCCGTCTGATGCGGTCTTAGCGGGTAGCAATACAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTAcgcg < 6:117349/145‑1 (MQ=255) gAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCa < 4:199305/149‑1 (MQ=255) gAAGCGGCCCTAATTTCACCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCATGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATACGCCGTCTTCGAGCTGGTATATGGCTAagcg > 5:117349/1‑145 (MQ=255) | TCGAGGCGTTGTACCCCGAGGTGGACTTTGCCTGGCTGGAGTTCGAGCGGGGCGGGC‑ATGGGGTGTTCATGCTCACCGCCGAGCAGTGCCGCCAGCATCA‑GGAATTGTTCAAGGCCC‑TCGTTTAGGCTATTTGGGGCCGCGAAGCGGCCCTAATTTCCCCCGGCTGATGCGGTCTTAGCGGGTAGCAATCCAGATCAACAGCCCTGCCTGGAACACGGCAA‑‑ACGCCACCAGGCAGGTAATGGTGAAACGCAATCCGCCGTCTTCGCGCTGGTATTTGGCTACGCGCTCA > NC_002947/2052644‑2052932 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |