| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,087,223 | T→C | 9.8% | intergenic (+36/+882) | PP_1865 → / ← aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,087,223 | 0 | T | C | 9.8% | 183.1 / 9.9 | 71 | intergenic (+36/+882) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase |
| Reads supporting (aligned to +/- strand): ref base T (35/29); new base C (5/2); total (40/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.04e-01 | |||||||||||
CCACGAGGCCCCAAGGTGCTCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGT > NC_002947/2087077‑2087370 | ccACGAGGCCCCAAGGTGCTCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTgg > 3:421522/1‑149 (MQ=40)ccACGAGGCCCCAAGGTGCTCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTgg < 8:2956/149‑1 (MQ=40) cccAAGGTGCTCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAgg > 3:385074/1‑148 (MQ=255) cccAAGGTGCTCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGa < 5:440777/149‑1 (MQ=255) aaGGTTCTCAAACCGAACGCCTGGGTGCAAGGGACGGCTGTACATTGTCATTTTTCGACGGTTC‑GGGTCATCAAACCCGCCAAA‑AACAAAAGACCTTGAAAGGGATGGCCCTTTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAAc < 1:291582/149‑1 (MQ=17) aaGGTGCTCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAAc > 8:410860/1‑148 (MQ=255) tCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGCCACGACAAAAAggga < 3:255471/140‑3 (MQ=14) tCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGCCACGACAAAAAggga > 4:255471/1‑138 (MQ=14) cAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCg > 6:360123/1‑149 (MQ=255) aaGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGTATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTc < 8:302117/149‑1 (MQ=255) aGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCg < 1:317344/149‑1 (MQ=255) cGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGCCACGACAAAAAgg < 6:65911/132‑1 (MQ=255) cGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGCCACGACAAAAAgg > 5:65911/1‑132 (MQ=255) ccTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGAGGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCACAACCCGTCGGCTCCcat > 6:95732/1‑149 (MQ=255) cTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCcat > 8:290962/1‑148 (MQ=255) ggTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGTCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTACCatcatc > 4:111586/1‑149 (MQ=255) gTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATcc < 7:410860/149‑1 (MQ=255) gTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATcc > 8:192550/1‑149 (MQ=255) tGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATAATCCg > 8:193307/1‑149 (MQ=255) cAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGt > 5:7033/1‑131 (MQ=255) cAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGt < 6:7033/131‑1 (MQ=255) cAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGc < 8:207633/149‑1 (MQ=255) aaGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGcc > 5:341485/1‑149 (MQ=255) cgggACGGCGGTCCATCCTCATGTGTCTACGGATC‑GGGTCATCAAAGCCTCCAAA‑ACCAAAAGACCTTGAAAGGCACGGCCC‑TTACGGCGGGTCCCTTTTTGGCGTGGTAAAAACGAACCAAAAACCGTCGGCTCCCATCATCCGGccc < 4:45792/148‑1 (MQ=18) ggCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGc > 5:96465/1‑149 (MQ=255) tACATGCTCATGTTTCGACGGATCGGGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTgcg > 1:5384/1‑149 (MQ=255) aCATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCt > 3:157968/1‑149 (MQ=255) aTGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTcc > 5:369718/1‑149 (MQ=255) cTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCggg < 6:341485/149‑1 (MQ=255) tCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCCTCCGCTCCCATCAAACGGCCCCAACACTGCGCTcacggg > 2:216699/1‑144 (MQ=18) tttCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTcccc > 3:185383/1‑149 (MQ=255) tttCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTccc < 3:419761/148‑1 (MQ=255) tttCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTccc < 3:413210/148‑1 (MQ=255) aCGGATC‑GGGTCATCAAAGCCGCCAAAGACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGc > 1:240072/1‑149 (MQ=255) ggATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTcc > 3:127530/1‑149 (MQ=255) ggTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCtt < 4:157968/149‑1 (MQ=255) ggTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCtt > 3:208610/1‑149 (MQ=255) gccgccAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGa < 7:290962/149‑1 (MQ=255) cgacaaa‑accaaaaGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGc < 5:360123/146‑1 (MQ=255) gccAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCa > 5:106597/1‑149 (MQ=255) gccAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCa > 5:112765/1‑149 (MQ=255) gccAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCa > 2:384885/1‑149 (MQ=255) aaa‑accaaaaGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCACGCACCCGCCAAGCGCCCCGGCGCAccc > 5:351813/1‑147 (MQ=17) aa‑accaaaaGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCAcgcg < 4:385074/149‑1 (MQ=255) a‑accaaaaGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACgcgc < 4:127530/149‑1 (MQ=255) aaGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAgg < 4:208610/149‑1 (MQ=255) aGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑c < 7:264254/149‑1 (MQ=255) ccTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCGGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGa > 4:88414/1‑131 (MQ=255) cTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑cccc > 2:243850/1‑148 (MQ=255) aaGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCccatccat < 5:238157/149‑1 (MQ=255) gggATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATgg < 6:96465/149‑1 (MQ=255) aTGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATGGGGc > 4:107832/1‑149 (MQ=255) aTGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCACGCTCCGGCCTTGCTACCGGGAGCACCCGCTGCAGG‑CCCCAACCAAGGGGc > 2:3496/1‑149 (MQ=14) ccc‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATGGATGGGGCCtgc < 6:369718/149‑3 (MQ=255) ccc‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATGGGGCCTCa < 2:5384/149‑1 (MQ=255) ccc‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCCGCCATGCTACCGGGAGCACCCGCAGCCCG‑CCCCCTCCAAGGGGccg > 2:386059/1‑146 (MQ=14) ccc‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCAGGCTGCGGCCGTGGTCCCCGGGGCCCGCCCGGCCGGCCCCCACCCAGGGGGcg > 5:266985/1‑146 (MQ=11) cc‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATGGATGGGGCCtgca < 7:192550/149‑4 (MQ=255) cc‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATGGGGCCTCAg > 3:43604/1‑149 (MQ=255) cc‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATGGGGCCTCAg < 1:243850/149‑1 (MQ=255) cc‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATACGGCCCCTAAGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCACCCGGCAGCACCCCCTCCAGG‑CCCCATCCATTGGGccgaac > 5:409083/1‑145 (MQ=14) c‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATGGGGCCTCCgc > 5:313959/1‑149 (MQ=255) c‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATGGGGCCTCAgc < 1:173064/149‑1 (MQ=255) aCGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATGGGGCCTCAgcg < 3:335490/147‑1 (MQ=255) cggcggGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATGGGGCCTCAGCGCt < 3:107832/148‑1 (MQ=255) gttccTTTTTGCCACGACAAAAAGGGACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATGGGGCCTCAGCGCTTGACggg > 5:107770/4‑149 (MQ=17) ttccTTTTTGCCACGACAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATGGGGCCTCAGCGCTTGACGGGc > 2:281866/3‑149 (MQ=255) tccTTTTTGCCACGACAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATGGGGCCTCAGCGCTTGACGGGc > 1:144483/2‑148 (MQ=255) cccTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCACGCTCCGGCCTTTCTACCGGGAGCACGCGCAGCCGG‑CCCCATCCATGGGGCCTCAGCCCTTGACGGGc > 1:87784/1‑148 (MQ=17) gTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGc < 4:43604/148‑1 (MQ=255) gTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGt > 2:189928/1‑149 (MQ=255) | CCACGAGGCCCCAAGGTGCTCAAAGCGAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATC‑GGGTCATCAAAGCCGCCAAA‑ACCAAAAGACCTTGAAAGGGATGGCCC‑TTACGGCGGGTCCCTTTTTGTCGTGGCAAAAAGGAACCAAAAACCGTCGGCTCCCATCATCCGGCCCCTACGCTGCGCTCCGGGGTCCCCTCGCTCCGGCCTTGCTCCCGGGAGCACGCGCTGCAGG‑CCCCATCCATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGT > NC_002947/2087077‑2087370 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |