| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,632 | T→C | 15.1% | T1046T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,632 | 0 | T | C | 15.1% | 271.2 / 37.8 | 128 | T1046T (ACT→ACC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (53/54); new base C (12/7); total (67/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 132 total aligned reads displayed.
CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGT > NC_002947/197484‑197778 | ccTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACt < 3:117042/149‑1 (MQ=38)ccTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACt < 2:361330/149‑1 (MQ=38)ccTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACt > 1:334666/1‑149 (MQ=38) cacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTc < 6:259006/148‑1 (MQ=39) acCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAg > 3:126724/1‑149 (MQ=39) acCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAg > 5:294945/1‑149 (MQ=21) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCg > 3:345235/1‑149 (MQ=21) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGCTCGACTGTCAGCg > 7:175567/1‑149 (MQ=255) cTGAGCAATCCTGCCCAGACGCCGGTAACCGTCACCCTGTCCAACGGCCAAACCATTACCGTTCAAGCCCGCAAGCCCCAGGGCAGCGACGATTTCCAGACCCCGGCGAATGACTTCTACA‑AAAACGGTTCGCCTGTCAGCGTCACCAt > 7:311853/1‑149 (MQ=11) tGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACA‑ACAACGGATCGACAGTCAGCGTCACCATc > 3:140149/1‑149 (MQ=255) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCTGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATc < 7:278086/147‑1 (MQ=37) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAATACCCAGGGCAGCGTCTATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCg < 4:13120/148‑1 (MQ=255) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCATCga < 1:175719/149‑1 (MQ=17) aaTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCATCGAGaa > 6:30060/1‑149 (MQ=17) aTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACACCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTAAGCGTCACCATAGAGAAc > 7:156621/1‑149 (MQ=255) ccTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGc > 1:104107/1‑149 (MQ=17) cTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGc < 1:197433/148‑1 (MQ=37) gCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGATCGACTGTCAGCGTCACCATCGTCAACGCca > 5:79898/1‑148 (MQ=255) cccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACACAGGGCAGCGACGATTTCCAGACCCCGGCGAATGAAGTCTACA‑ACAACGGTTCGACAGTCAGCGTCACCATCGAGAACGCca > 5:142835/1‑147 (MQ=255) cccAGACGCAGGTAAACGTGACCCTGTCCAACGGACAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCca < 6:100043/147‑1 (MQ=255) ccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAg > 8:272081/1‑149 (MQ=17) cAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAgg < 2:104107/149‑1 (MQ=17) aGACGCCGGTAACCGTGACCCTGTCCAACGGCGAAACCAATACCGTTGAAGCAGGCAAGAACCAGGGCAGCGTCGATTTCCAGACACCGGCGAATGACGTCTAGA‑ACAACGGTTGGACCGTCAGCGTCTCCATAGAGAACGCCACACGc > 4:84780/1‑149 (MQ=11) aGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGc > 5:47303/1‑149 (MQ=37) gACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg < 1:47741/149‑1 (MQ=17) tcGCCTGTGACCGTGACCCTGTCGATCGGCCAAAGGATTACCGTTGAAGCCGGCAAAACCCTGGGCTGGGTCGAATTCCAGTCCCGGGCGAATGACGTCTTCA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCgg < 3:308890/148‑1 (MQ=11) gCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTa < 4:155339/149‑1 (MQ=37) ccGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTaa < 6:294945/149‑1 (MQ=17) cGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAt > 3:182412/1‑149 (MQ=17) ggTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAtt > 6:267693/1‑149 (MQ=17) tgaCCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 1:17841/147‑1 (MQ=255) tAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 4:392817/149‑1 (MQ=35) aCCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 6:381670/149‑1 (MQ=34) aCCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 6:47303/149‑1 (MQ=34) ccGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 4:163437/148‑1 (MQ=16) ccGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 4:136651/149‑1 (MQ=16) ccGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 4:208928/149‑1 (MQ=16) cGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 1:221303/1‑148 (MQ=12) aCCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACt < 2:162970/149‑1 (MQ=12) aCCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCAGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 5:25017/148‑1 (MQ=255) cccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 5:211070/140‑1 (MQ=12) cccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc > 5:169982/1‑140 (MQ=12) cccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 6:169982/140‑1 (MQ=12) cccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc > 6:211070/1‑140 (MQ=12) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 5:218629/1‑149 (MQ=32) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc > 8:164331/1‑149 (MQ=32) tCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcccc > 1:58168/1‑149 (MQ=12) tCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcccc < 7:55418/149‑1 (MQ=12) tCCAACGCCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACACCGGCGAATGACGTCTACA‑ACAACGCTTCGACTGTCAGCGTCACCATCGAGAACCCAACACGCGGTAATTTCGAGCAACTGAcccc > 6:129723/1‑149 (MQ=11) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCg > 2:90790/1‑148 (MQ=32) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa > 1:22284/1‑149 (MQ=32) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa < 7:52486/149‑1 (MQ=32) cGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAcc < 3:3535/149‑1 (MQ=33) ggCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCTACTGTGAGCGTCACCATCGAGAAGGCCACAGGCGGTATTTTCGAGCAACTGACCCCGAAccc < 3:211509/149‑1 (MQ=255) ggCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAccc < 4:217587/149‑1 (MQ=34) cAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑c > 2:163109/1‑149 (MQ=255) aaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGc < 6:369080/149‑1 (MQ=35) ccATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCg < 5:134715/149‑1 (MQ=37) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCgg > 8:346787/1‑149 (MQ=37) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCgg < 8:69885/149‑1 (MQ=37) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCgg > 1:421247/1‑149 (MQ=37) aTTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGc < 2:334666/149‑1 (MQ=37) ttACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CCCCGGCt < 2:58168/149‑1 (MQ=12) cGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CCCCGGCTCAGa > 3:212398/1‑149 (MQ=12) gTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGAc > 6:189011/1‑149 (MQ=37) ttGAAGGCGTGAAAACCCAGGTGAGCGTCGACTGCCAGACCGCGGCGAATGACGTGTACA‑ACAACGGTTGGACTGTCAGCGTCAACATAGAGAACGCCACAGGCGGTAATTTCTATTAACTGACCCCGTACCCGT‑‑CCCCGGCTCAGAcc < 8:302796/149‑1 (MQ=11) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACACGA‑‑CGACGGCTCAGAcc > 5:333512/1‑149 (MQ=255) ttGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACt < 4:87651/121‑1 (MQ=17) ttGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACt > 3:87651/1‑121 (MQ=17) aGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTACGACTGTCAGCCTCACCATCGAGAACGCCACACGCGCTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CCCCGGCTCAcaccacca > 1:87932/1‑147 (MQ=11) gccgccAAGACCCATGGCAGCTGCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGAt < 8:156621/149‑1 (MQ=255) gCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CCCCGGCTCAGACCACGa > 2:407883/1‑148 (MQ=12) gCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACACCGAACCCGA‑‑CCCCGGCTCAGACACCGATCaac > 8:287451/1‑147 (MQ=11) aaaaCCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAGACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CCCCGGCTCAGACCACGATCaac > 1:102667/4‑146 (MQ=11) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 4:221615/102‑1 (MQ=32) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc > 3:221615/1‑102 (MQ=32) aGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTc < 6:60245/149‑1 (MQ=39) ggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCg < 5:137184/148‑1 (MQ=39) tttCCAGACCCCGGCGAATGACGTCTACA‑ACTACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGAAATTTCGATCATCTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTg < 4:281093/149‑1 (MQ=11) ttCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CCCCGGCTCa < 8:282041/113‑1 (MQ=17) ttCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CCCCGGCTCa > 7:282041/1‑113 (MQ=17) ccAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGa > 4:363621/1‑149 (MQ=255) cAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCa > 2:23920/1‑49 (MQ=38) aGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGAcc < 1:29181/149‑1 (MQ=255) gACCCCGGCGAATGACGTCTACA‑ACAACGGCTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGAccc < 8:175567/149‑1 (MQ=255) cccGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCATGTGGTTTGAAACCTTATGCGCCGGCTCAGACCACGATCACCGACTCGGTCGACCCCA‑CTACTGCGAcac > 1:358892/1‑146 (MQ=14) atggtcGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGTGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCT‑CTACTGCGACCCTGACCGCCTc < 5:175158/144‑1 (MQ=255) gACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGACCCTGACCGCCTCGc > 3:367456/1‑148 (MQ=255) gTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGACCCTGACCGCCTCGCCAAg > 6:240709/1‑149 (MQ=255) tCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGACCCTGACCGCCTCGCCAAGc < 8:262448/149‑1 (MQ=255) cTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACACCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGACCCTGACCGCCTCGCCAAGCg > 3:5497/1‑149 (MQ=255) aca‑acaACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCAAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGACCCTGACCGCCTCGCCAAGCGt > 3:132238/1‑148 (MQ=255) a‑acaacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGACCCTGACCGCCTCGCCAAGCGTGAc > 7:247620/1‑149 (MQ=255) acaacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGACCCTGACCGCCTCGCCAAGCGTGAcc > 6:387576/1‑149 (MQ=255) caacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGACCCTGACCGCCTCGCCAAGCGTGAcc > 8:61914/1‑148 (MQ=255) ggTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAgg > 8:363580/1‑149 (MQ=255) gACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAggcggc < 7:346787/148‑1 (MQ=255) gACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAggcggc < 3:363621/148‑1 (MQ=255) gACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGgcggcg > 2:75106/1‑149 (MQ=255) aCTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACCTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGgcggcg < 1:90790/149‑1 (MQ=255) | CCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACA‑ACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA‑‑CGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCA‑CTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGT > NC_002947/197484‑197778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |