| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,193,092 | T→C | 6.4% | intergenic (+186/‑237) | PP_1938 → / → PP_1939 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,193,092 | 0 | T | C | 6.4% | 224.2 / 3.5 | 78 | intergenic (+186/‑237) | PP_1938/PP_1939 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (35/38); new base C (3/2); total (38/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCACCTAGTTACCAGGCCGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCC > NC_002947/2192945‑2193238 | ccACCTAGTTACCAGGCCGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAAttt < 1:149138/149‑1 (MQ=255) cACCTAGTTACCAGGCCGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTg > 2:304102/1‑149 (MQ=255) cACCTAGTTACCAGGCCGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTg < 5:435975/149‑1 (MQ=255) aCCTAGTTACCAGGCCGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAAtt < 2:360776/146‑1 (MQ=255) aCCTAGTTACCAGGCCGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAAtt > 1:360776/1‑146 (MQ=255) aCCTAGTTACCAGGCCGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTg > 6:207680/1‑148 (MQ=255) ccTAGTTACCAGGCCGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGca < 5:207680/149‑1 (MQ=255) ccTAGTTACCAGGCCGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGca < 2:215326/149‑1 (MQ=255) gTTACCAGGCCGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACAt < 5:69872/148‑1 (MQ=255) aCCAGGCCGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGTAATGTGCAAATTCTGcacactgc > 3:322756/1‑144 (MQ=255) aGGCCGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAgg < 2:364816/149‑1 (MQ=255) gCCGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAgggg < 6:406760/149‑1 (MQ=255) ccGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGc < 6:183789/149‑1 (MQ=255) ccGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGc < 6:67946/149‑1 (MQ=255) cGACAGGGGTGGTTTTTTTCTGCGAGCGGACCGAAAATCTCCCCGTAACTTATTCGGGCTAATTCAACGGCCCGAACTCCTTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAggg < 1:353913/149‑1 (MQ=255) cGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGTAATGTGCAAATTCTGCACACTGCTAggggag < 4:322756/149‑3 (MQ=38) gACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGTAATGTGCAAATTCTGCACACTGCTAggggagc < 6:426354/149‑4 (MQ=38) aCAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGctga < 2:137462/149‑1 (MQ=255) cTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAAt < 4:14411/149‑1 (MQ=255) gATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAg < 3:350980/148‑1 (MQ=255) gATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAg < 5:155986/148‑1 (MQ=255) aTTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAgg > 4:232165/1‑148 (MQ=255) tttctGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGt > 2:192915/1‑148 (MQ=255) tttctGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGt > 3:216498/1‑148 (MQ=255) tctGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTc < 4:216498/147‑1 (MQ=255) gcggagcgAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGActt > 2:214884/1‑149 (MQ=255) cggagcgAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGGACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGAc > 5:372889/1‑146 (MQ=255) cggagcgAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGAc < 6:372889/146‑1 (MQ=255) gcgAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTAc > 7:104462/1‑149 (MQ=255) aaCAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTgg > 5:365913/1‑149 (MQ=255) aaCAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTgg < 3:232165/149‑1 (MQ=255) aCAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGct > 2:278057/1‑115 (MQ=255) aCAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGct < 1:278057/115‑1 (MQ=255) gCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTcgc > 6:183278/1‑149 (MQ=255) cTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTcgcg > 1:387328/1‑149 (MQ=255) ccccGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTcgcg > 8:45841/1‑147 (MQ=255) cccGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCgg < 6:185621/147‑1 (MQ=255) cccGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAg > 1:319170/1‑149 (MQ=255) cccGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAg > 6:252983/1‑149 (MQ=255) cGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAgtg > 3:24231/1‑149 (MQ=255) gTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAgtgt < 8:346918/149‑1 (MQ=255) ccTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGa < 4:24231/148‑1 (MQ=255) ccTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGa < 5:183278/148‑1 (MQ=255) aGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAg > 4:53118/1‑148 (MQ=255) gggCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGgatga < 4:220523/149‑1 (MQ=255) gCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGgatgat > 6:79365/1‑148 (MQ=255) gCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGAtt < 7:117173/149‑1 (MQ=255) aTTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAgg < 2:319170/149‑1 (MQ=255) aTTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAg < 1:214884/148‑1 (MQ=255) aTTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAg < 5:252983/148‑1 (MQ=255) ttCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGgt < 3:53118/149‑1 (MQ=255) t‑‑ttCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTg > 2:41733/1‑149 (MQ=255) ttCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAgt > 3:310141/1‑114 (MQ=255) ttCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAgt < 4:310141/114‑1 (MQ=255) gcgAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCgg < 2:38631/148‑1 (MQ=255) cgAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGc > 2:3403/1‑138 (MQ=255) cgAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGc < 1:3403/138‑1 (MQ=255) cgAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGCTCTGTCTGCGGATTGCGGa > 4:369004/1‑148 (MQ=255) gAAGGTATGTGATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGaaa < 5:49844/149‑1 (MQ=255) ggTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTc < 6:243907/149‑1 (MQ=255) gTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCa < 7:45841/149‑1 (MQ=255) tATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCAt < 1:289345/149‑1 (MQ=255) gAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTctct > 2:278841/1‑149 (MQ=255) aaGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGAGGAAAGTCATCTAGGTCTCtt > 3:235978/1‑149 (MQ=255) gCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTc < 1:304102/149‑1 (MQ=255) cGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTc > 4:89298/1‑148 (MQ=255) agccccTAGTAATGTGCAAATTCTGCACACTGCTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACcgc > 2:106162/3‑149 (MQ=38) tCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACcgcg > 1:437278/1‑149 (MQ=255) tCCCCTAGCAGTGTGCAGAATTAACACATTAATAGGGGCTGAATGAATAGGCAGTAAGCAAACTTCTTACTGATCGCGGAGTGTGATCAGGATGATTAAGGTCTTTATGAGGATTGCGGAAAGTCATCAAGGTATCTTTCAATACcgcg > 7:65841/1‑149 (MQ=255) cccTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGc > 3:76894/1‑149 (MQ=255) cccTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGc > 3:71086/1‑149 (MQ=255) cccTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGc > 8:404116/1‑149 (MQ=255) tAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTc < 7:293752/135‑1 (MQ=255) tAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTc > 8:293752/1‑135 (MQ=255) gtaatgtgCAAATTCTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGAGTGCGGAAAGTCATCTAGGTCTGTTTCACTACCGCGGCCTccg > 8:348027/5‑149 (MQ=255) aGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAgg > 1:411458/1‑149 (MQ=255) aGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAgg > 1:420692/1‑149 (MQ=255) aGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAgg < 5:79365/149‑1 (MQ=255) aGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCCCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAg < 1:192915/148‑1 (MQ=255) aTTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTAGTGGTCGCGGAGAGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCATTCACAACCGCGGCCTCCCCCGCGAAGGGcc > 1:234907/1‑149 (MQ=255) aTTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGTTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGcc > 1:93339/1‑149 (MQ=255) | CCACCTAGTTACCAGGCCGACAGGGCTGGATTCTTTCTGCGAGCGGAGCGAACAGCTCCCCGTACCTGAGTCGGGCTAATTCAACGGCCCG‑ACT‑‑TTCGCGAAGGTATGTCATCAGAAGCGGAATGCTCCCCTAGCAGTGTGCAGAATTTGCACATTACTAGGGGCTGACTGAATAGGCAGTCAGCAGACTTCTTACTGGTCGCGGAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCC > NC_002947/2192945‑2193238 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |