Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,336,498 | A→T | 14.3% | intergenic (‑42/+38) | PP_2052 ← / ← PP_5500 | bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,336,498 | 0 | A | T | 14.3% | 128.5 / 14.3 | 56 | intergenic (‑42/+38) | PP_2052/PP_5500 | bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (23/25); new base T (4/4); total (27/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.87e-01 |
AGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGC > NC_002947/2336352‑2336637 | agaAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAAc < 1:300238/149‑1 (MQ=255) aaGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAg < 2:132935/149‑1 (MQ=255) cgctgccttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGGGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGGTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAg < 4:353671/142‑1 (MQ=255) gcttgcttGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCaa < 2:41353/144‑1 (MQ=255) gcttgcttGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCaa > 1:41353/1‑144 (MQ=255) cttgcttgAGGGTCCTGAAGCGCAGGCGCTCGGTGGCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCg < 4:89643/149‑1 (MQ=255) gcttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCga < 7:76415/147‑1 (MQ=255) cttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGTTGCAGGCgagat < 5:97070/149‑2 (MQ=255) cttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGTTGCAGGCgaga < 8:397250/148‑1 (MQ=255) cttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGaa > 2:310336/1‑149 (MQ=255) cttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGaa < 3:356855/149‑1 (MQ=255) ttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGTTGCAGGCga > 6:65290/1‑145 (MQ=255) ttgAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGTTGCAGGCga < 5:65290/145‑1 (MQ=255) gAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACg < 1:310336/148‑1 (MQ=255) aGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGgt > 4:394199/1‑149 (MQ=255) tCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGgtgtgt < 3:394199/149‑1 (MQ=255) cTGCAGCTCAGGCTGTCTGTGTCGAAGAGGGTGCAATCCATATCGATGATGGCGC‑TGAAAATCTGTTTACCGTTAAAGAAAAGCATTGTCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGtgtgtg < 7:72969/148‑1 (MQ=255) cTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGtgtgtg < 2:26024/148‑1 (MQ=255) tGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGCGTGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGgtgtgt > 1:332249/1‑147 (MQ=255) tGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAg > 3:217772/1‑149 (MQ=255) aGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGtgtgtg < 2:82999/144‑1 (MQ=255) aGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGtgtgtg > 1:82999/1‑144 (MQ=255) cgcAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCa < 2:259529/149‑1 (MQ=255) gcAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAg > 3:100470/1‑149 (MQ=255) gcAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAg < 7:311130/149‑1 (MQ=255) ggCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTgg < 5:70420/149‑1 (MQ=255) gctcTCGGTGTCTTAGCGGGTGCCATCCATATCGAAGTTGGCGC‑TGAAATTCTGTTTACCGTGAAAGAAATGCAATGGCTGTTGCCCCTTGT‑GGTTGGGTGTGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTggg < 8:385440/146‑1 (MQ=255) gcTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTggggg > 2:101648/1‑149 (MQ=255) tgtCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTggggg > 3:334252/1‑143 (MQ=255) tgtCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTggggg < 4:334252/143‑1 (MQ=255) gAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTc > 1:268674/1‑149 (MQ=255) aaGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGTTGCAGGCgaga < 3:119619/114‑1 (MQ=255) aaGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGTTGCAGGCgaga > 4:119619/1‑114 (MQ=255) tccatATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGtt < 2:268674/149‑1 (MQ=255) tccatATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGtt < 5:164023/149‑1 (MQ=255) tccatATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGtt < 6:204566/149‑1 (MQ=255) ccatATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACAGGTTc > 8:106646/1‑149 (MQ=255) tCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGATCGACAg > 5:34573/1‑149 (MQ=255) gAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAg < 4:75468/106‑1 (MQ=255) gAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAg > 3:75468/1‑106 (MQ=255) gAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAgg < 4:386106/148‑1 (MQ=255) gAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAgg < 4:217772/148‑1 (MQ=255) gAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAgg < 1:101648/148‑1 (MQ=255) gAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCgggg > 5:331985/1‑120 (MQ=255) gAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCgggg < 6:331985/120‑1 (MQ=255) cccTGTTTACCGTCACACAACAGCCTTGGCGGTGGCCCCTTGC‑CGTGGCGTCACGCATCTCGCCTCCAACAGGCGAGAACGGTGTGGGAGCTGCAGTGGCGGCAGTCAGGGCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGa < 2:202394/147‑1 (MQ=255) tttACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCATGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGaag > 8:397796/1‑144 (MQ=255) aagaaaAGCATTGGCTGTTGCCCCTTGTGCGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAggc > 1:26469/1‑149 (MQ=255) agaaaAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAggcgg > 1:121669/1‑149 (MQ=255) gCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCg > 5:96153/1‑146 (MQ=255) cccTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCa > 3:117756/1‑147 (MQ=255) gTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGCCGCagag > 5:137800/1‑112 (MQ=255) tCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCagag > 5:206736/1‑106 (MQ=255) gCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGGGGGGGCAGTCAGGGCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCCACCGTTg > 5:242248/1‑149 (MQ=255) gttctcGCCTGTTGCAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTgc > 2:527/3‑149 (MQ=255) ttctcGCCTGTTGCAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTgcg > 8:171044/2‑149 (MQ=255) tctcGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTgcgg > 3:138273/1‑149 (MQ=255) tcGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTgcggc > 5:56803/1‑148 (MQ=255) | AGAAGCTTGCTTGAGTGTCCTGAAGCGCAGGCGCTCGGTGTCGAAGAGGGTGCCATCCATATCGAAGATGGCGC‑TGAAAATCTGTTTACCGTGAAAGAAAAGCATTGGCTGTTGCCCCTTGT‑CGTTGCGTCAGGCATCTCGCCTGCAACAGGCGAGAACGGTGTGTGAGCTGCAGTGGGGGCAGTCAGGTCGGGGGCACACGTTCGACAGGGGGACGCTCAGGAGTGACGCAGAGGTAAGGCGGGGCGGAGCGGGGCGTGCAGAGGAGGTTGGCAACCGTTGCGGC > NC_002947/2336352‑2336637 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |