Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,424,381 | G→C | 7.0% | intergenic (‑206/‑9) | PP_2124 ← / → yegS | glycosyl transferase/lipid kinase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,424,381 | 0 | G | C | 7.0% | 179.9 / 2.6 | 57 | intergenic (‑206/‑9) | PP_2124/yegS | glycosyl transferase/lipid kinase |
Reads supporting (aligned to +/- strand): ref base G (27/26); new base C (2/2); total (29/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.09e-01 |
GGGGAGCCACTGCCGGGCGCGTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGACCTGCGCGATAGCGGCTGGGT > NC_002947/2424233‑2424529 | ggggAGCCACTGCCGGGCGCGTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCgg > 4:375104/1‑149 (MQ=255) ggggAGCCACTGCCGGGCGCGTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCgg > 8:226689/1‑149 (MQ=255) ggAGCCACTGCCGGGCGCGTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGc < 8:248877/149‑1 (MQ=255) ccGGGCGCGTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTgg > 6:389222/1‑149 (MQ=255) cGGGCGCGTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGt > 6:160495/1‑149 (MQ=255) gcgTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTc > 5:154943/1‑145 (MQ=255) tCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAg < 5:389222/149‑1 (MQ=255) gCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGggtg < 8:17437/149‑1 (MQ=255) gCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGggtg < 6:368000/149‑1 (MQ=255) gCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCAAGGCCATGCAACGTTCCGGGCAGGCGAGGGGTCGAGATAGGGggtg > 7:378340/1‑149 (MQ=255) ggggTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCAt > 5:437876/1‑149 (MQ=255) ggggTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCAt < 6:346065/149‑1 (MQ=255) gggTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGCCCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCAtt > 3:131884/1‑149 (MQ=255) ggTATTTGCTTAGCATAGCCGGGATTGCCAAGTGTGTAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCAttt < 4:131884/149‑1 (MQ=255) ggaTTTGCTGAGGATAGCCGGGCTTGGCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTGCAGGCCATGCAACGATCCGCGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCAttt > 6:1458/3‑148 (MQ=255) gTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCa > 4:68950/1‑116 (MQ=255) gTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCa < 3:68950/116‑1 (MQ=255) gTATTTGCTGAGCATAGCCGGGATTGCCAAGGGTGGAAAAAATGACCGGCGATGCGATAAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGCGCAGGCCAGTGGTCGTGATAGGGGGTGGTCCAttt > 2:140168/1‑148 (MQ=255) tttGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACg < 6:437876/149‑1 (MQ=255) aGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGAcgc > 1:145417/1‑149 (MQ=255) cATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGAcgcg > 8:278184/1‑148 (MQ=255) gCCGGGATTGCCAAGTGTGGAAAAATTGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACAt > 2:279343/1‑149 (MQ=255) cGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATg > 7:207804/1‑148 (MQ=255) gATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAg < 3:318106/149‑1 (MQ=255) aaGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGgcgc > 2:392664/1‑147 (MQ=255) gAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACg > 1:365634/1‑117 (MQ=255) gAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACg < 2:365634/117‑1 (MQ=255) gAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATg > 7:206475/1‑149 (MQ=255) aaTGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGt < 8:43085/149‑1 (MQ=255) gcgatgcgatCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGtg > 2:24008/1‑142 (MQ=255) gcgatgcgatCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGtg < 1:24008/142‑1 (MQ=255) atgcgatCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCa < 3:375104/149‑1 (MQ=255) atCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCAGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAg > 4:151684/1‑149 (MQ=255) gTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGa > 2:374169/1‑149 (MQ=255) ttGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGAt < 2:281855/149‑1 (MQ=255) gCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATg > 5:16544/1‑148 (MQ=255) aGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAAc < 6:11103/149‑1 (MQ=255) aGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAAc < 5:13293/149‑1 (MQ=255) ggCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACg < 5:160495/149‑1 (MQ=255) cgcCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGt < 8:207804/149‑1 (MQ=255) gcCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTg > 5:440129/1‑149 (MQ=255) ccGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTgc < 8:378340/149‑1 (MQ=255) gCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCa < 1:279343/149‑1 (MQ=255) ccAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGGGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAgc < 6:442323/149‑1 (MQ=255) cAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAgcg > 2:291800/1‑149 (MQ=255) cAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAgcg > 7:346251/1‑149 (MQ=255) ccAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGAc > 4:134006/1‑149 (MQ=255) ccAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGAc > 7:112147/1‑149 (MQ=255) ccAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGAc > 8:352630/1‑149 (MQ=255) cAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGAc < 6:16544/148‑1 (MQ=255) cAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGAc < 2:145417/148‑1 (MQ=255) aaCGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGACCTGCGCGATAg > 5:274666/1‑149 (MQ=255) aaCGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGACCTGCGCGATAg > 5:83161/1‑149 (MQ=255) gATCCGCGCAGGCCAGTGGTCGTGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAACGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGACCTGCGCGATAGCgg < 1:140168/149‑1 (MQ=255) gATCCGCGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGACCTGCGCGATAGCgg < 5:1458/149‑1 (MQ=255) tCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGACCTGCGCGATAGCGGCt > 2:267038/1‑149 (MQ=255) cGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGACCTGCGCGATAGCGGCTgg < 7:352630/149‑1 (MQ=255) cGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGACCTGCGCGATAGCGGCTgg < 1:267038/149‑1 (MQ=255) cGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGACCTGCGCGATAGCGGCTgg < 6:440129/149‑1 (MQ=255) ggCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGACCTGCGCGATAGCGGCTGGGt < 7:226689/149‑1 (MQ=255) | GGGGAGCCACTGCCGGGCGCGTCCATGGCAATAGGGGTATTTGCTGAGCATAGCCGGGATTGCCAAGTGTGGAAAAAATGACCGGCGATGCGATCAGTTGCAGGCCTGGCGCCGGCCCAATGTTTTTTCCAGGCCATGCAACGATCCGGGCAGGCCAGTGGTCGAGATAGGGGGTGGTCCATTTTACGGAGACGCGCACATGCAAGGGCGCAAGGCAATGCTGGTGCTGCACGGCAAGCAGGCGATGAACGAAGACGTGCGCAGCGCCGTGGGCGACCTGCGCGATAGCGGCTGGGT > NC_002947/2424233‑2424529 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |