| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,469,862 | G→A | 6.1% | intergenic (+31/+4) | vacJ → / ← PP_2164 | lipoprotein VacJ/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,469,862 | 0 | G | A | 6.1% | 239.0 / 3.4 | 81 | intergenic (+31/+4) | vacJ/PP_2164 | lipoprotein VacJ/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (40/36); new base A (3/2); total (43/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-02 | |||||||||||
CCTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCGTACCTCGATCTGATCACCCAC > NC_002947/2469717‑2470006 | ccTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGt < 3:171982/149‑1 (MQ=255) cTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGtt < 8:231579/149‑1 (MQ=255) cTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCCGAGGCCGCTTTGCGGCC‑CCAGGtt < 1:213901/149‑1 (MQ=255) gCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTc > 8:247615/1‑148 (MQ=255) tcGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAAt < 1:438159/147‑1 (MQ=255) ggCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGc < 7:56012/147‑1 (MQ=255) ggCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGc < 1:45078/147‑1 (MQ=255) ggCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCAt < 3:388456/149‑1 (MQ=255) ggCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCAt > 3:335892/1‑149 (MQ=255) aaaTCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCa < 8:152896/148‑1 (MQ=255) gATTCAGGGTGACAAGTACGTCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGAATGGCCAGAATCCg > 1:307990/1‑149 (MQ=255) gATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCCGAGGCCGCTTTGCGGCC‑CCAGGtt > 6:168383/1‑129 (MQ=38) gATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCCGAGGCCGCTTTGCGGCC‑CCAGGtt < 5:168383/129‑1 (MQ=38) ttCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCg > 6:273558/1‑147 (MQ=255) aGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGcc > 8:324763/1‑149 (MQ=255) gggTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGccc > 3:7259/1‑149 (MQ=255) gggTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGcca < 2:102205/149‑2 (MQ=255) ggTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGccc > 1:205110/1‑148 (MQ=255) aaGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTc < 1:399997/149‑1 (MQ=255) tACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTctgc > 8:398959/1‑149 (MQ=255) cATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTctgct < 2:240962/148‑1 (MQ=255) ttCATTAGCAATGCCGACCAGCAAAACCCCGCGGTGAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACGGGTGATCTGTGAACCAGGGGGCGCAAAGCGGCCGCCGGGTGGAAGGC‑TGGCCAGAAAACGCCCCCCGACCTTCAGGTgcccg > 8:356840/1‑149 (MQ=255) aTTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTgcccgccc > 2:46408/1‑149 (MQ=255) ttCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCg > 7:304930/1‑130 (MQ=255) ttCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCg < 8:304930/130‑1 (MQ=255) ttCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGcccgcccg > 6:144693/1‑149 (MQ=255) ttCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGcccgcccg > 8:202502/1‑149 (MQ=255) cGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCgg < 4:335892/148‑1 (MQ=255) cAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAGAACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCt > 1:330947/1‑149 (MQ=255) ccTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCgg < 4:7259/149‑1 (MQ=255) cTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGGCgg > 6:232650/1‑148 (MQ=255) tACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGc > 4:317798/1‑148 (MQ=255) cTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATc < 7:247615/149‑1 (MQ=255) gCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCa > 5:19975/1‑149 (MQ=255) cAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCa > 3:311108/1‑148 (MQ=255) ccGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCAc > 1:162062/1‑149 (MQ=255) ccGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCAc > 1:271248/1‑149 (MQ=255) gcgAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACtt > 3:343289/1‑149 (MQ=255) gAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCg < 7:324763/149‑1 (MQ=255) gAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCg > 4:96587/1‑149 (MQ=255) aaGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTg < 3:317798/149‑1 (MQ=255) aaGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTg < 2:330947/149‑1 (MQ=255) ggTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGcc < 2:252827/81‑1 (MQ=255) ggTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGcc > 1:252827/1‑81 (MQ=255) ggTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGc < 1:223414/149‑1 (MQ=255) ggTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGc < 5:416332/149‑1 (MQ=255) gTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCa > 6:336948/1‑149 (MQ=255) tGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCAt < 5:273558/149‑1 (MQ=255) gAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATg > 2:70482/1‑149 (MQ=255) aaGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGTGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGGCGGCAATCGATACCACTTCGGTGCTGGCATGc < 2:307990/149‑1 (MQ=255) aaGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATg < 4:343289/148‑1 (MQ=255) ggATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAg > 8:299607/1‑149 (MQ=255) aGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCAGAACTTCTGCTGCCCGCCCGGCTGGTCGGCATTCGATACCTCTTGTGTGCTGGCATGCAGCCCCTTCa < 2:145911/149‑1 (MQ=255) tCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAgcg > 6:18848/1‑149 (MQ=255) cGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGccc < 8:320455/140‑1 (MQ=255) cGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCAAGCAGccc > 7:320455/1‑140 (MQ=255) gAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGcc > 5:7157/1‑149 (MQ=255) acgacTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGAt > 8:139460/1‑149 (MQ=255) cgacTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATg < 7:139460/149‑1 (MQ=255) gacTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATg > 4:165614/1‑148 (MQ=255) gacTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATg > 8:161176/1‑148 (MQ=255) cTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGAc < 5:58620/149‑1 (MQ=255) ttCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACg < 5:18848/149‑1 (MQ=255) ttCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACg < 5:144693/149‑1 (MQ=255) cTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACg > 1:225895/1‑147 (MQ=255) aTCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGt < 7:299607/148‑1 (MQ=255) tgtgAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGAt > 5:439290/1‑149 (MQ=255) attgAACCCGAGGCCGCTTTGCGGCC‑CCAGGTTCAATGCGTGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGAt > 4:37510/3‑149 (MQ=38) tgAACCTGGGGCCTCTAAGCGGCC‑TCGGGTTGAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGAt < 5:268589/147‑1 (MQ=255) gAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCg > 1:98113/1‑149 (MQ=255) aaCCTGGGGCCGCAACGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCCGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCGt < 6:253191/149‑1 (MQ=255) aaCCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATCGACTCCGTCCATCCg < 7:202502/148‑1 (MQ=255) aaCCCGAGGCCGCTTTGCGGCC‑CCAGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCg > 4:300464/1‑148 (MQ=255) ccTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCGTAc > 7:202078/1‑149 (MQ=255) ccTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCGTAc > 2:180534/1‑149 (MQ=255) gCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCACCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGCGTCGATCCGTACCTCGATCt > 5:438289/1‑148 (MQ=255) gCAAAGCGGCC‑TCGGGTTCAATGCATGGCAAGAATCAGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGACGATCCGTACCTCGATCt > 7:169571/1‑148 (MQ=255) ggCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCGTACCTCGATCTGATcaccc < 2:162062/149‑1 (MQ=255) ggCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCGTACCTCGATCTGATcaccc < 2:271248/149‑1 (MQ=255) cc‑TCGGGTTCAATTCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTTGCATGAAGCCCCTTCAGCGCCGGATGTACTGAGTCGATCCGTACCTCGATCTGATcacccac < 4:311108/149‑1 (MQ=255) cGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCGTACCTCGATCTGATcacccac > 1:67593/1‑146 (MQ=255) | CCTGCTCTCGGCCGAAAAGCTGATTCAGGGTGACAAGTACATCTTCATTCGCAATGCCTACCTGCAAAACCGCGAGTTCAAGGTGAAGGATGGCGAGGTCGAAG‑ACGACTTCTGATCTGTGAACCTGGGGCCGCAAAGCGGCC‑TCGGGTTCAATGCATGGCCAGAATCCGCAGCCCGAACTTCTGCTGCCCGCCCGGCTGGTCGGCAATCCATACCACTTCGGTGCTGGCATGCAGCCCCTTCAGCGCCGGATGGACGGAGTCGATCCGTACCTCGATCTGATCACCCAC > NC_002947/2469717‑2470006 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |