Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,703,434 C→T 8.1% I197I (ATC→ATT)  PP_2369 → leucine‑rich repeat‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,703,4340CT 8.1% 169.1 / 3.6 62I197I (ATC→ATT) PP_2369leucine‑rich repeat‑containing protein
Reads supporting (aligned to +/- strand):  ref base C (30/26);  new base T (3/2);  total (34/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.64e-01

TGCGCAAGCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCATTGGCGCACT  >  NC_002947/2703287‑2703580
                                                                                                                                                    |                                                                                                                                                  
tGCGCAAGCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATcg                                                                                                                                                   >  3:399523/1‑149 (MQ=255)
   gcAAGCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATcgccg                                                                                                                                                >  6:257963/1‑149 (MQ=255)
    cAAGGCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTTAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGTGGGCCAACCTGGCGCTTGCTGCAATcgccgc                                                                                                                                               <  8:261065/149‑1 (MQ=255)
    cAAGCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTTGATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATcgccg                                                                                                                                                >  1:315142/1‑149 (MQ=255)
    cAAGCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATAAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATcgccg                                                                                                                                                >  1:34869/1‑148 (MQ=255)
     aaGCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATcgccgc                                                                                                                                               >  4:139506/1‑148 (MQ=255)
     aaGCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGA‑GGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATcgccgc                                                                                                                                               >  6:114610/1‑147 (MQ=255)
       gCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGcaag                                                                                                                                            <  3:207195/149‑1 (MQ=255)
       gCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGATTGAAGGCGAGGGGGGGGCCGGCGAGAGAACCGTGGAGGAGGCGTTGAGGGCAAACCTGCCGATTGATGCAATCGCCGcaag                                                                                                                                            >  2:214137/1‑149 (MQ=255)
         cTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGcaagga                                                                                                                                          >  8:289507/1‑149 (MQ=255)
          tttGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATAGCAGcaaggat                                                                                                                                         >  5:151287/1‑149 (MQ=255)
                cGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGcaaggatcaagga                                                                                                                                   <  2:315142/149‑1 (MQ=255)
                 gCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGcaaggatcaaggat                                                                                                                                  >  1:63518/1‑149 (MQ=255)
                          gagaCATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGAt                                                                                                                         <  4:399523/149‑1 (MQ=255)
                              cATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAg                                                                                                                      <  4:106088/148‑1 (MQ=255)
                                   atatTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGAcc                                                                                                                >  8:45968/1‑149 (MQ=255)
                                    tatTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGAcat                                                                                                               >  5:351623/1‑147 (MQ=255)
                                    tatTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCt                                                                                                               >  6:200500/1‑149 (MQ=255)
                                    tatTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCt                                                                                                               >  7:8522/1‑149 (MQ=255)
                                      ttGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAAAAACCTTGAGGAGGCGTTTAGGGCCAACCTTGCCCTTGCTTCAATCGCCGCAAGGATCAAGGATTAAATAGAAGAGCAGACCTGt                                                                                                             >  1:347547/1‑149 (MQ=255)
                                               gTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGAt                                                                                                     >  1:227728/1‑148 (MQ=255)
                                                   aTCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAAc                                                                                                 >  6:114069/1‑149 (MQ=255)
                                                   aTCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAAc                                                                                                 >  5:195871/1‑149 (MQ=255)
                                                     cAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAAc                                                                                                 >  8:27614/1‑147 (MQ=255)
                                                       aaGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAgg                                                                                             >  5:262289/1‑149 (MQ=255)
                                                        aGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGc                                                                                            >  5:32546/1‑149 (MQ=255)
                                                                 cAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGAc                                                                                                                 >  5:389581/1‑119 (MQ=255)
                                                                 cAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGAc                                                                                                                 <  6:389581/119‑1 (MQ=255)
                                                                       aaGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTc                                                                             >  7:125562/1‑149 (MQ=255)
                                                                           ttGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTc                                                                         >  2:410523/1‑149 (MQ=255)
                                                                             gAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTcc                                                                        <  5:257963/148‑1 (MQ=255)
                                                                              aaGGCGATGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCt                                                                       <  7:367582/148‑1 (MQ=255)
                                                                              aaGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCt                                                                       <  3:139506/148‑1 (MQ=255)
                                                                              aaGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTg                                                                      >  2:202442/1‑149 (MQ=255)
                                                                                    aGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGcc                                                                >  1:282465/1‑149 (MQ=255)
                                                                                            gCCGTCCAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTCCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACACCGTCTTTCCTGCCAGCCGACAACGc                                                        >  8:44560/1‑149 (MQ=255)
                                                                                               gTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCgt                                                     >  3:273369/1‑149 (MQ=255)
                                                                                                  gagaGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCgtgt                                                   <  7:375442/148‑1 (MQ=255)
                                                                                                       cACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCgt                                                     >  5:225233/1‑141 (MQ=255)
                                                                                                       cACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCgt                                                     <  6:225233/141‑1 (MQ=255)
                                                                                                         cccTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAgtgt                                           <  5:114069/149‑1 (MQ=255)
                                                                                                          ccTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCTACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTc                                          <  5:114610/149‑1 (MQ=255)
                                                                                                           cTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTca                                         <  7:45968/149‑1 (MQ=255)
                                                                                                              gaggagGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCacac                                      >  1:88838/1‑149 (MQ=255)
                                                                                                                    gCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCg                                >  1:314945/1‑149 (MQ=255)
                                                                                                                    gCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCg                                <  1:202442/149‑1 (MQ=255)
                                                                                                                     cGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGGCGTGTTGAAGTGTCACACCCTGCgg                               >  6:50854/1‑149 (MQ=255)
                                                                                                                       ttGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCt                             >  6:78613/1‑149 (MQ=255)
                                                                                                                           gggCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTg                         <  2:358674/149‑1 (MQ=255)
                                                                                                                            ggCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTgg                        <  8:125562/149‑1 (MQ=255)
                                                                                                                            ggCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTgg                        <  8:8522/149‑1 (MQ=255)
                                                                                                                            ggCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTgg                        <  6:262289/149‑1 (MQ=255)
                                                                                                                            gaccAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTcac                                        <  6:45092/131‑1 (MQ=255)
                                                                                                                            gaccAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTcac                                        >  5:45092/3‑133 (MQ=255)
                                                                                                                             gCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTggg                       <  2:63518/149‑1 (MQ=255)
                                                                                                                               cAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGa                     <  6:195871/149‑1 (MQ=255)
                                                                                                                                 ttgcggCGATTGCAGCAAGCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAag                   >  7:240956/5‑149 (MQ=255)
                                                                                                                                      gcgcTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAaggag                <  1:214137/147‑1 (MQ=255)
                                                                                                                                       tccTTGCGGCGATTGCAGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGt              >  4:264141/3‑148 (MQ=255)
                                                                                                                                       cgcTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTc             <  6:32546/149‑1 (MQ=255)
                                                                                                                                        gcTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCa            >  1:404042/1‑149 (MQ=255)
                                                                                                                                         cTTGCGGCGATTGCAGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAaggag                >  5:413891/1‑144 (MQ=255)
                                                                                                                                         cTTGCGGCGATTGCAGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAaggag                <  6:413891/144‑1 (MQ=255)
                                                                                                                                          ttGCGGCGATTGCAGCAAGGATCAAGTATGAAATCGATGAGCAGAGCTGTCAGTGTATCAAGCAGGCGGTTGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACTCCCTGCg                                <  4:14069/127‑1 (MQ=255)
                                                                                                                                          ttGCGGCGATTGCAGCAAGGATCAACGATGAAATCGATGAGCAGACCTGTCAGTGGAACAACCAGGCCGTCGGCACAGCCTCTTTCCTGCCAGCCGACAACGCCCTGTTGAAGTGTCACACACTGCg                                >  3:14069/1‑127 (MQ=255)
                                                                                                                                            gctgcAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGAACTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCATTg         <  6:151287/148‑1 (MQ=255)
                                                                                                                                              tgcAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGGGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCATTGgcg      >  4:362828/1‑149 (MQ=255)
                                                                                                                                                cAATCGCCGCAAGGATCAAGGATGAAATCGTTGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCATTGgcgc     <  2:227728/148‑1 (MQ=255)
                                                                                                                                                  aTCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCATTGGCGCACt  <  7:27614/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
TGCGCAAGCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCATTGGCGCACT  >  NC_002947/2703287‑2703580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑