Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,703,437 C→A 9.2% A198A (GCC→GCA)  PP_2369 → leucine‑rich repeat‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,703,4370CA 9.2% 176.6 / 5.6 62A198A (GCC→GCA) PP_2369leucine‑rich repeat‑containing protein
Reads supporting (aligned to +/- strand):  ref base C (30/26);  new base A (4/2);  total (34/28)
Fisher's exact test for biased strand distribution p-value = 6.81e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.87e-01

GCAAGCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCATTGGCGCACTGGTG  >  NC_002947/2703290‑2703584
                                                                                                                                                    |                                                                                                                                                   
gcAAGCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATcgccg                                                                                                                                                    >  6:257963/1‑149 (MQ=255)
 cAAGGCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTTAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGTGGGCCAACCTGGCGCTTGCTGCAATcgccgc                                                                                                                                                   <  8:261065/149‑1 (MQ=255)
 cAAGCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTTGATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATcgccg                                                                                                                                                    >  1:315142/1‑149 (MQ=255)
 cAAGCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATAAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATcgccg                                                                                                                                                    >  1:34869/1‑148 (MQ=255)
  aaGCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATcgccgc                                                                                                                                                   >  4:139506/1‑148 (MQ=255)
  aaGCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGA‑GGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATcgccgc                                                                                                                                                   >  6:114610/1‑147 (MQ=255)
    gCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGcaag                                                                                                                                                <  3:207195/149‑1 (MQ=255)
    gCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGATTGAAGGCGAGGGGGGGGCCGGCGAGAGAACCGTGGAGGAGGCGTTGAGGGCAAACCTGCCGATTGATGCAATCGCCGcaag                                                                                                                                                >  2:214137/1‑149 (MQ=255)
      cTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGcaagga                                                                                                                                              >  8:289507/1‑149 (MQ=255)
       tttGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATAGCAGcaaggat                                                                                                                                             >  5:151287/1‑149 (MQ=255)
             cGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGcaaggatcaagga                                                                                                                                       <  2:315142/149‑1 (MQ=255)
              gCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGcaaggatcaaggat                                                                                                                                      >  1:63518/1‑149 (MQ=255)
                       gagaCATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGAt                                                                                                                             <  4:399523/149‑1 (MQ=255)
                           cATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAg                                                                                                                          <  4:106088/148‑1 (MQ=255)
                                atatTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGAcc                                                                                                                    >  8:45968/1‑149 (MQ=255)
                                 tatTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGAcat                                                                                                                   >  5:351623/1‑147 (MQ=255)
                                 tatTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCt                                                                                                                   >  6:200500/1‑149 (MQ=255)
                                 tatTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCt                                                                                                                   >  7:8522/1‑149 (MQ=255)
                                   ttGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAAAAACCTTGAGGAGGCGTTTAGGGCCAACCTTGCCCTTGCTTCAATCGCCGCAAGGATCAAGGATTAAATAGAAGAGCAGACCTGt                                                                                                                 >  1:347547/1‑149 (MQ=255)
                                            gTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGAt                                                                                                         >  1:227728/1‑148 (MQ=255)
                                                aTCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAAc                                                                                                     >  6:114069/1‑149 (MQ=255)
                                                aTCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAAc                                                                                                     >  5:195871/1‑149 (MQ=255)
                                                  cAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAAc                                                                                                     >  8:27614/1‑147 (MQ=255)
                                                    aaGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAgg                                                                                                 >  5:262289/1‑149 (MQ=255)
                                                     aGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGc                                                                                                >  5:32546/1‑149 (MQ=255)
                                                              cAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGAc                                                                                                                     >  5:389581/1‑119 (MQ=255)
                                                              cAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGAc                                                                                                                     <  6:389581/119‑1 (MQ=255)
                                                                    aaGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTc                                                                                 >  7:125562/1‑149 (MQ=255)
                                                                        ttGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTc                                                                             >  2:410523/1‑149 (MQ=255)
                                                                          gAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTcc                                                                            <  5:257963/148‑1 (MQ=255)
                                                                           aaGGCGATGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCt                                                                           <  7:367582/148‑1 (MQ=255)
                                                                           aaGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCt                                                                           <  3:139506/148‑1 (MQ=255)
                                                                           aaGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTg                                                                          >  2:202442/1‑149 (MQ=255)
                                                                                 aGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGcc                                                                    >  1:282465/1‑149 (MQ=255)
                                                                                         gCCGTCCAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTCCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACACCGTCTTTCCTGCCAGCCGACAACGc                                                            >  8:44560/1‑149 (MQ=255)
                                                                                            gTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCgt                                                         >  3:273369/1‑149 (MQ=255)
                                                                                               gagaGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCgtgt                                                       <  7:375442/148‑1 (MQ=255)
                                                                                                    cACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCgt                                                         >  5:225233/1‑141 (MQ=255)
                                                                                                    cACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCgt                                                         <  6:225233/141‑1 (MQ=255)
                                                                                                      cccTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAgtgt                                               <  5:114069/149‑1 (MQ=255)
                                                                                                       ccTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCTACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTc                                              <  5:114610/149‑1 (MQ=255)
                                                                                                        cTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTca                                             <  7:45968/149‑1 (MQ=255)
                                                                                                           gaggagGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCacac                                          >  1:88838/1‑149 (MQ=255)
                                                                                                                 gCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCg                                    <  1:202442/149‑1 (MQ=255)
                                                                                                                 gCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCg                                    >  1:314945/1‑149 (MQ=255)
                                                                                                                  cGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGGCGTGTTGAAGTGTCACACCCTGCgg                                   >  6:50854/1‑149 (MQ=255)
                                                                                                                    ttGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCt                                 >  6:78613/1‑149 (MQ=255)
                                                                                                                        gggCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTg                             <  2:358674/149‑1 (MQ=255)
                                                                                                                         ggCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTgg                            <  8:125562/149‑1 (MQ=255)
                                                                                                                         ggCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTgg                            <  8:8522/149‑1 (MQ=255)
                                                                                                                         ggCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTgg                            <  6:262289/149‑1 (MQ=255)
                                                                                                                         gaccAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTcac                                            <  6:45092/131‑1 (MQ=255)
                                                                                                                         gaccAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTcac                                            >  5:45092/3‑133 (MQ=255)
                                                                                                                          gCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTggg                           <  2:63518/149‑1 (MQ=255)
                                                                                                                            cAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGa                         <  6:195871/149‑1 (MQ=255)
                                                                                                                              ttgcggCGATTGCAGCAAGCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAag                       >  7:240956/5‑149 (MQ=255)
                                                                                                                                   gcgcTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAaggag                    <  1:214137/147‑1 (MQ=255)
                                                                                                                                    tccTTGCGGCGATTGCAGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGt                  >  4:264141/3‑148 (MQ=255)
                                                                                                                                    cgcTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTc                 <  6:32546/149‑1 (MQ=255)
                                                                                                                                     gcTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCa                >  1:404042/1‑149 (MQ=255)
                                                                                                                                      cTTGCGGCGATTGCAGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAaggag                    <  6:413891/144‑1 (MQ=255)
                                                                                                                                      cTTGCGGCGATTGCAGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAaggag                    >  5:413891/1‑144 (MQ=255)
                                                                                                                                       ttGCGGCGATTGCAGCAAGGATCAAGTATGAAATCGATGAGCAGAGCTGTCAGTGTATCAAGCAGGCGGTTGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACTCCCTGCg                                    <  4:14069/127‑1 (MQ=255)
                                                                                                                                       ttGCGGCGATTGCAGCAAGGATCAACGATGAAATCGATGAGCAGACCTGTCAGTGGAACAACCAGGCCGTCGGCACAGCCTCTTTCCTGCCAGCCGACAACGCCCTGTTGAAGTGTCACACACTGCg                                    >  3:14069/1‑127 (MQ=255)
                                                                                                                                         gctgcAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGAACTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCATTg             <  6:151287/148‑1 (MQ=255)
                                                                                                                                           tgcAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGGGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCATTGgcg          >  4:362828/1‑149 (MQ=255)
                                                                                                                                             cAATCGCCGCAAGGATCAAGGATGAAATCGTTGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCATTGgcgc         <  2:227728/148‑1 (MQ=255)
                                                                                                                                               aTCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCATTGGCGCACt      <  7:27614/149‑1 (MQ=255)
                                                                                                                                                  gccgcAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCATTGGCGCACTGGt   <  2:347547/149‑1 (MQ=255)
                                                                                                                                                   ccgcAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCATTGGCGCACTGGTg  <  7:44560/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
GCAAGCCTTTGTCCGCCTTTGCAGAGACATTGATATTGGCAGGCGTT‑ATCAAAGCCATTTGCAATCGAAGCTTGAAGGCGAGGGGGGGGCCGTCGAGAGCACCCTGGAGGAGGCGTTGAGGGCCAACCTGGCGCTTGCTGCAATCGCCGCAAGGATCAAGGATGAAATCGATGAGCAGACCTGTCAGTGGATCAACCAGGCGGTGGGCACAGCGTCTTTCCTGCCAGCCGACAACGCCGTGTTGAAGTGTCACACCCTGCGGCTGTTGGGGAAGGAGGTCATTGGCGCACTGGTG  >  NC_002947/2703290‑2703584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑