| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,355,865 | T→C | 19.2% | intergenic (‑34/+92) | PP_2951 ← / ← PP_2952 | TetR family transcriptional regulator/LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,355,865 | 0 | T | C | 19.2% | 155.5 / 32.0 | 78 | intergenic (‑34/+92) | PP_2951/PP_2952 | TetR family transcriptional regulator/LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (29/34); new base C (6/9); total (35/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 | |||||||||||
TTTTACGGGCGACACCCGAGGTCTTTACCAAGAGGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGACAACCAGGCGTGCAGGTGCCT > NC_002947/3355717‑3356010 | ttttACGGGCGACACCCGAGGTCTTTACCAAGAGGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGt > 2:220292/1‑149 (MQ=255) cGGGCGACACCCGAGGTCTTTACCAAGAGGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGCTCTcc < 6:49298/149‑1 (MQ=255) gggCGACACCCGAGGTCTTTACCAAGAGGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTccc > 1:112917/1‑149 (MQ=255) gggCGACACCCGAGGTCTTTACCAAGAGGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGCTCTccc > 5:220576/1‑149 (MQ=255) gCGACACCCGAGGTCTTTACCAAGAGGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTg < 7:76982/149‑1 (MQ=255) cGACACCCGAGGTCTTTACCAAGAGGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTgg < 2:77510/149‑1 (MQ=255) acacCCGAGGTCTTTACCAAGAGGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTc < 1:110553/149‑1 (MQ=255) cacCCTAGGTCTTTACAAAGAGGTCCATGCCCTTGGCGTGAATCCCTTTTTCGTAAATAATCTTCTCTGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTATAACGATCGTTCTCCCTGGTc < 5:269370/148‑1 (MQ=255) cacCCGAGGTCTTTACCAAGAGGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGCTCTCCCTGGTCa < 2:425067/149‑1 (MQ=255) gAGGGCTTTACCAAGAGGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAagcag < 8:74876/149‑1 (MQ=255) tCTTTACCAAGAGGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCt > 7:406369/1‑149 (MQ=255) tttACCAAGAGGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCtt > 2:365268/1‑148 (MQ=255) tttACCAAGAGGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCtt > 3:392511/1‑148 (MQ=255) tACCAAGAGGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGa < 6:432803/148‑1 (MQ=255) ccAAGAGGTCCCTGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGaaa < 1:67498/148‑1 (MQ=255) cAAGAGGTCCATGCCCGTGGCGTGAATTCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGCTCTCCCTGGTCAAGCAGCGCTTGAAatt > 2:420853/1‑149 (MQ=255) gagGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAattatt > 5:294388/1‑149 (MQ=255) gagGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAattatt < 1:220292/149‑1 (MQ=255) gagGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAattatt > 1:110571/1‑149 (MQ=255) gTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGa < 8:406369/149‑1 (MQ=255) cATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTg > 8:94067/1‑149 (MQ=255) aTGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGc < 4:392511/149‑1 (MQ=255) cccGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGt < 3:178737/148‑1 (MQ=255) gTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCTTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGc > 5:140035/1‑147 (MQ=255) gTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCggg > 8:32708/1‑149 (MQ=255) gTGAATCCCGTTTTCGCAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCggg > 5:327123/1‑149 (MQ=255) tGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCgggg < 6:350322/149‑1 (MQ=255) aaTCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGCTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGgc < 2:360214/148‑1 (MQ=255) cccGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCg > 7:180779/1‑149 (MQ=255) ccGTTTTAGTTAATTAGCTTCTCGGCAGTCGACAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATACATGTAGTCAGAGTAGAACGATCGTGCTCCCTGGTCAAGCAGCGCGTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCgg < 3:245724/149‑1 (MQ=255) gTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGcc > 8:368430/1‑148 (MQ=255) cGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGCTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCtt > 4:154010/1‑149 (MQ=255) gTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGCTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCttt < 6:220576/149‑1 (MQ=255) aaaTAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTc > 3:16472/1‑148 (MQ=255) aaaTAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTc > 4:81497/1‑148 (MQ=255) aaTAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGa > 5:116798/1‑149 (MQ=255) aaTAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGa < 2:141802/149‑1 (MQ=255) aaTAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGa < 1:365268/149‑1 (MQ=255) aTAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGa > 4:397865/1‑148 (MQ=255) aTAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGAt < 2:279172/149‑1 (MQ=255) aGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCTTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCa < 6:140035/148‑1 (MQ=255) gCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCCTGCTTTCGATCaga < 7:368430/149‑1 (MQ=255) ttCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGt > 1:25859/1‑149 (MQ=255) cGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGCTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGtggct > 4:74124/1‑149 (MQ=255) tCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTc > 5:391985/1‑149 (MQ=255) cGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGCTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTc < 3:74124/148‑1 (MQ=255) gCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTcgc > 5:357348/1‑149 (MQ=255) ccAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTcgcg < 2:110571/149‑1 (MQ=255) ccAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTcgcg < 6:327123/149‑1 (MQ=255) ccAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGCTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGAAAGCGGGGCGCCGGCTTGCTTTCGATCAGAGTGGCTGGCTTcgcg > 6:148751/1‑149 (MQ=255) cAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCgcgc > 3:154598/1‑149 (MQ=255) gATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGa < 2:112917/149‑1 (MQ=255) aTTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGAt < 3:397865/149‑1 (MQ=255) ttttttCGCGTGTATCGGTCATTGGCGTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGAt < 7:289158/148‑1 (MQ=255) tCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTcg > 5:110807/1‑149 (MQ=255) tCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTc < 8:180779/148‑1 (MQ=255) gcgTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTcgcg < 6:357348/149‑1 (MQ=255) gtgtATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCCGTCGCGCt > 4:279280/1‑149 (MQ=255) tATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTcc < 6:116798/148‑1 (MQ=255) gTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTTCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCg < 7:94067/149‑1 (MQ=255) aTCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCgg < 4:139376/147‑1 (MQ=255) aTCCATGTAGTCAGAGTAGAACGATCGCTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGc < 3:154010/148‑1 (MQ=255) cATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGa < 8:60745/149‑1 (MQ=255) aTGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGa > 5:178626/1‑148 (MQ=255) aTGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGa > 3:375915/1‑148 (MQ=255) agagTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGACAACCAGGc < 2:25859/149‑1 (MQ=255) agagTAGAACGATCGCTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTg < 2:435742/106‑1 (MQ=255) agagTAGAACGATCGCTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTg > 1:435742/1‑106 (MQ=255) agTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGACAACCAg > 3:347661/1‑145 (MQ=255) agTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGACAACCAg < 4:347661/145‑1 (MQ=255) agTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGACAACCAGGCGt > 3:423821/1‑149 (MQ=255) agTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGACAACCAGGCGt < 6:110807/149‑1 (MQ=255) aaCGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGACAACCAGGCGTGCAgg > 1:435270/1‑149 (MQ=255) gATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGACAACCAGGCGTGCAGGTGc < 6:391985/149‑1 (MQ=255) gATCGCTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGACAACCAGGCGTGCAGGTGc < 1:420853/149‑1 (MQ=255) gATCGCTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGGGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTCGACAACCAGGCGTGCAGGTGc < 2:331068/149‑1 (MQ=255) tCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGACAACCAGGCGTg < 3:138659/140‑1 (MQ=255) tCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGACAACCAGGCGTg > 4:138659/1‑140 (MQ=255) tCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGACAACCAGGCGTGCAGGTGCCt > 1:355515/1‑149 (MQ=255) | TTTTACGGGCGACACCCGAGGTCTTTACCAAGAGGTCCATGCCCGTGGCGTGAATCCCGTTTTCGTAAATAAGCTTCTCGGCAGTCGCCAGGATTTTTTCGCGTGTATCGGTCATTGGCTTATCCATGTAGTCAGAGTAGAACGATCGTTCTCCCTGGTCAAGCAGCGCTTGAAATTATTCGATTGCGTGCAAGCGGGGCGCCGGCGTGCTTTCGATCAGAGTGGCTGGCTTCGCGCTGATCAGTCGCGCTCCAGTTCGGCGAAGCGGCTGGACAACCAGGCGTGCAGGTGCCT > NC_002947/3355717‑3356010 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |