Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,489,766 G→C 5.3% A542G (GCG→GGG)  clpV ← protein ClpV1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,489,7660GC 5.3% 249.8 / 3.3 76A542G (GCG→GGG) clpVprotein ClpV1
Reads supporting (aligned to +/- strand):  ref base G (31/41);  new base C (2/2);  total (33/43)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.38e-01

ATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCCTGCTGCCACTGGGCATTGAGCTGCT  >  NC_002947/3489618‑3489913
                                                                                                                                                    |                                                                                                                                                     
aTGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAgcg                                                                                                                                                       >  2:301524/1‑149 (MQ=255)
 tGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAgcgc                                                                                                                                                      >  7:221727/1‑149 (MQ=255)
 tGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAgcgc                                                                                                                                                      >  7:200438/1‑149 (MQ=255)
  gCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGcgcg                                                                                                                                                     >  6:314793/1‑149 (MQ=255)
    aGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTg                                                                                                                                                   <  3:341484/149‑1 (MQ=255)
      ggCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGa                                                                                                                                                 <  1:301524/149‑1 (MQ=255)
       gCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGACGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGAc                                                                                                                                                >  8:352284/1‑149 (MQ=255)
             tCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTgg                                                                                                                                          <  1:376837/149‑1 (MQ=255)
             tCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTgg                                                                                                                                          >  7:323743/1‑149 (MQ=255)
               cTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCTGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGt                                                                                                                                                    >  5:90269/1‑137 (MQ=255)
               cTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCTGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGt                                                                                                                                                    <  6:90269/137‑1 (MQ=255)
                  gCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTgg                                                                                                                                     <  8:233497/148‑1 (MQ=255)
                   cccAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGAc                                                                                                                                                >  6:136100/1‑137 (MQ=255)
                   cccAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGAc                                                                                                                                                <  5:136100/137‑1 (MQ=255)
                   cccAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTc                                                                                                                                   >  5:238411/1‑149 (MQ=255)
                    ccAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCg                                                                                                                                  <  5:253038/149‑1 (MQ=255)
                      aGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCAGGGTATCGATTTCGTCACGCAGCCTCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGcc                                                                                                                                <  2:164962/149‑1 (MQ=255)
                      aGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGcc                                                                                                                                <  5:347038/149‑1 (MQ=255)
                        cACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCtt                                                                                                                              <  5:222548/149‑1 (MQ=255)
                          cgcgCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGc                                                                                                                            <  2:69766/149‑1 (MQ=255)
                           gcgcTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCa                                                                                                                           >  3:278476/1‑149 (MQ=255)
                            cgcTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCAc                                                                                                                          <  6:23718/149‑1 (MQ=255)
                             gcTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGcc                                                                                                                                >  5:328992/1‑142 (MQ=255)
                             gcTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGcc                                                                                                                                <  6:328992/142‑1 (MQ=255)
                                   cAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGcc                                                                                                                  <  8:200438/149‑1 (MQ=255)
                                   cAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGcc                                                                                                                  <  8:221727/149‑1 (MQ=255)
                                   cAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGT‑CAGGCACGGATGCCCATGGCGATGGCCCCCCAGTACCCCAGCGCCTGGACCAGTTG‑CTGGTAGCCTTTCACCCC‑CGcc                                                                                                                  >  8:114821/1‑148 (MQ=255)
                                    aaGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACgcg‑cgc                                                                                                                   >  2:240720/1‑147 (MQ=255)
                                    aaGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCCACTGGTCCACGCG‑CTGGTCga                                                                                                                                 >  4:138480/1‑133 (MQ=255)
                                    aaGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCCACTGGTCCACGCG‑CTGGTCga                                                                                                                                 <  3:138480/134‑2 (MQ=255)
                                        aGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTc                                                                                                             >  3:146487/1‑149 (MQ=255)
                                        aGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTc                                                                                                             >  2:305476/1‑149 (MQ=255)
                                         gggCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCg                                                                                                            >  2:175966/1‑149 (MQ=255)
                                          ggCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCgg                                                                                                           >  2:56109/1‑149 (MQ=255)
                                          ggCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCgg                                                                                                           >  5:384722/1‑149 (MQ=255)
                                            ccGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCa                                                                                                         <  8:323743/149‑1 (MQ=255)
                                                   gcgcTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCCACTGGTCCACGCG‑CTGGTCgaca                                                                                                                               >  8:290793/1‑118 (MQ=38)
                                                   gcgcTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCCACTGGTCCACGCG‑CTGGTCgaca                                                                                                                               <  7:290793/121‑4 (MQ=38)
                                                     gcTGCACGGTATCGATTTCGTCACGCAGCACCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCACTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTa                                                                                                >  2:103732/1‑149 (MQ=255)
                                                         cACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTg                                                                                             <  5:314793/148‑1 (MQ=255)
                                                         cACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTg                                                                                             <  5:408178/148‑1 (MQ=255)
                                                         cACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGAGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTg                                                                                             <  1:305476/148‑1 (MQ=255)
                                                                tgcaTTTCGTCACGCCGCAGCTTGCCACGGGGTATGCCGGT‑CAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTgg                                                                                    <  7:114821/146‑1 (MQ=255)
                                                                        gTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCgg                                                                             >  7:236255/1‑149 (MQ=255)
                                                                         tCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCCTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCgg                                                                             <  1:343328/149‑1 (MQ=255)
                                                                          cACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCa                                                                           >  6:124566/1‑149 (MQ=255)
                                                                             gcagcaTCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCg                                                                        <  1:240720/149‑1 (MQ=255)
                                                                               agcaTCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGtt                                                                      <  4:146487/149‑1 (MQ=255)
                                                                               agcaTCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGtt                                                                      >  1:189195/1‑149 (MQ=255)
                                                                                        cccAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTc                                                             >  3:423449/1‑149 (MQ=255)
                                                                                         ccAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTc                                                             >  4:183336/1‑148 (MQ=255)
                                                                                            gCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAgc                                                         >  3:99833/1‑149 (MQ=255)
                                                                                             cGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGGACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGACGCCGCCAACGATGCCGACGCCCAgca                                                        <  5:10249/149‑2 (MQ=255)
                                                                                                gATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCt                                                     >  8:365493/1‑149 (MQ=255)
                                                                                                 aTGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCtt                                                    <  4:278476/149‑1 (MQ=255)
                                                                                                    ccGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAg                                                 <  6:384722/149‑1 (MQ=255)
                                                                                                    ccGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAg                                                 <  7:352284/149‑1 (MQ=255)
                                                                                                    ccGGTCCAGCCACTGATGACCTGGGCGATGGCGCCACTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAg                                                 <  1:103732/149‑1 (MQ=255)
                                                                                                          cAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGtt                                            <  2:74583/148‑1 (MQ=255)
                                                                                                            gCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCGCCGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCAt                                                                          <  1:89840/117‑1 (MQ=255)
                                                                                                            gCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCAt                                                                          >  2:89840/1‑116 (MQ=255)
                                                                                                            gCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGa                                         <  8:236255/149‑1 (MQ=255)
                                                                                                             ccACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGAc                                        <  2:189195/149‑1 (MQ=255)
                                                                                                              cACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGAcc                                       <  3:183336/149‑1 (MQ=255)
                                                                                                              cACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGAc                                        >  8:302703/1‑148 (MQ=255)
                                                                                                                 tgatgaCCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGt                                    >  4:193594/1‑149 (MQ=255)
                                                                                                                   atgaCCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTc                                  >  4:82854/1‑149 (MQ=255)
                                                                                                                     gaCCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGAc                                        >  6:16862/1‑141 (MQ=255)
                                                                                                                     gaCCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGAc                                        <  5:16862/141‑1 (MQ=255)
                                                                                                                        cTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGc                              >  4:116016/1‑148 (MQ=255)
                                                                                                                             cGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCctgc                        >  8:70416/1‑149 (MQ=255)
                                                                                                                                   cgccgcTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCCTGCTGCCAc                  <  1:175966/149‑1 (MQ=255)
                                                                                                                                      cgcTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCCTGCTGCCACTgg               >  2:61205/1‑149 (MQ=255)
                                                                                                                                           tCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCCTGCTGCCACTGGGCAtt          <  6:238411/149‑1 (MQ=255)
                                                                                                                                            cGACCAGCGCGTGTACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCCTGCTGCCACTGGGCATTg         <  6:36948/149‑1 (MQ=255)
                                                                                                                                              aCCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCCTGCTGCCACTGGGCATTGAg       <  6:193273/149‑1 (MQ=255)
                                                                                                                                              aCCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCCTGCTGCCACTGGGCATTGAg       <  6:186738/149‑1 (MQ=255)
                                                                                                                                              aCCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGACGCCGCCAACGATGCCGACGccc                                                            >  2:140554/1‑96 (MQ=37)
                                                                                                                                              aCCAGCGCGTGGACCAGTCG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGACGCCGCCAACGATGCCGACGccc                                                            <  1:140554/96‑1 (MQ=25)
                                                                                                                                                 aGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCCTGCTGCCACTGGGCATTGAgctg    <  4:423449/149‑1 (MQ=255)
                                                                                                                                                  gcgcGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCCTGCTGCCACTGGGCATTGAgctgc   >  6:358720/1‑149 (MQ=255)
                                                                                                                                                  gcgcGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCCTGCTGCCACTGGGCATTGAgctgc   >  5:408547/1‑149 (MQ=255)
                                                                                                                                                  gcgcGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCCTGCTGCCACTGGGCATTGAgctg    >  2:75642/1‑148 (MQ=255)
                                                                                                                                                  gcgcGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCCTGCTGCCACTGGGCATTGAgctg    <  1:75642/148‑1 (MQ=255)
                                                                                                                                                   cgcgTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCCTGCTGCCACTGGGCATTGAgctgct  <  7:70416/149‑1 (MQ=255)
                                                                                                                                                   cgcgTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCCTGCTGCCACTGGGCATTGAgctgct  >  2:401851/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
ATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGG‑CTGGTCGCCTTGCACGCG‑CGCCAGCTCGGCACGCAGGGTATTGAGCTGCTGGGCGTCGGCATCGTTGGCGGCGTCCAGCGCCTTGAGCTGTTCGACCAGTTCCAGCTCCTGCTGCCACTGGGCATTGAGCTGCT  >  NC_002947/3489618‑3489913

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑