Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,528,908 | T→A | 9.3% | L242Q (CTG→CAG) | dnaEB → | error‑prone DNA polymerase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,528,908 | 0 | T | A | 9.3% | 148.5 / 5.8 | 54 | L242Q (CTG→CAG) | dnaEB | error‑prone DNA polymerase |
Reads supporting (aligned to +/- strand): ref base T (24/25); new base A (3/2); total (27/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.31e-01 |
ACGTGCGTGGTCGCCGTGCCTTGCAGGACTGCATGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGCATACCCCGGCAAGCTGGCTGCGCGAATTGTGCGAGCAAGGCATGCCGCTGCGCTG > NC_002947/3528761‑3529055 | aCGTGCGTGGTCGCCGTGCCTTGCAGGACTGCATGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACctg < 3:50391/149‑1 (MQ=255) gcgtgGGCGCCGTGCCTTGCAGGACTGCATGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTgg < 8:342578/149‑1 (MQ=255) gtgGTCGCCGTGCCTTTCAGGAATGAATGACTGACATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATTGCGACC‑GGCACCTGCGCAGCCAGGAGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGcc > 8:390441/1‑149 (MQ=255) gtgGTCGCCGTGCCTTGCAGGACTGCATGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGcc < 8:94762/149‑1 (MQ=255) gCCGTGCCTTGCAGGACTGCATGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGAcc > 1:435493/1‑149 (MQ=255) ccGTGCCTTGCAGGACTGCATGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGAccc > 2:234320/1‑149 (MQ=255) gTGCCTTGCAGGACTGCTTGTCTGCCATCGGGCAGCATTGCAAGTTGAGCGAGGCCGGGCGCTTTATGTTTGCCAATGGGGAAC‑GGCAACTGCGCAGCGAGGCGCAACTGGCCGAGCTGTTTCGGCTCTTCCTGCTGGGCgattcgctg < 6:1001/149‑8 (MQ=255) gTGCCTTGCAGGACTGCATGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTg < 5:70998/149‑1 (MQ=255) aGGACTGCATGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGcc < 6:330947/149‑1 (MQ=255) cATGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGGCCAGCAGGTCgagcgga < 3:398681/131‑5 (MQ=255) cATGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGGCCAGCAGGTCgagcgga < 7:46025/131‑5 (MQ=255) cATGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGGCCAGCAGGTCgagcgga > 8:46025/1‑127 (MQ=255) cATGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGGCCAGCAGGTCgagcgga > 4:398681/1‑127 (MQ=255) cATGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCt > 8:191890/1‑149 (MQ=255) aTGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTg > 4:71042/1‑149 (MQ=255) tGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGc < 4:345771/149‑1 (MQ=255) cTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAg < 7:19699/149‑1 (MQ=255) tGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTCGTCATTGCCCGGCGCTGCCAGt > 4:299231/1‑149 (MQ=255) ccATCCGCCAGCATTGCCAGGTGAGCGAGTCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGttt < 6:354539/149‑1 (MQ=255) cATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGttt > 8:233592/1‑148 (MQ=255) gCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAACGGGCCCCTGCGCAGCCAGGCGCAACTGGCCGGGCTGTTTCCGCTCGCCCTCCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCTGTTTGAcgt > 1:337172/1‑147 (MQ=255) gCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGTCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTg > 7:52388/1‑149 (MQ=255) gCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGgc < 1:23373/132‑1 (MQ=255) gCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGgc > 2:23373/1‑132 (MQ=255) gCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTg < 4:286243/149‑1 (MQ=255) aGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGc < 7:323242/149‑1 (MQ=255) aTTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCgaga < 5:194966/108‑1 (MQ=255) aTTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCgaga > 6:194966/1‑108 (MQ=255) aTTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCgaa > 3:79487/1‑149 (MQ=255) aGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCTGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTAc > 6:155656/1‑149 (MQ=255) cTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAAc < 1:117569/149‑1 (MQ=255) cTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAAc > 3:153124/1‑149 (MQ=255) tCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTAc < 8:402083/130‑1 (MQ=255) tCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTAc > 7:402083/1‑130 (MQ=255) tGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTg > 7:217163/1‑149 (MQ=255) tttGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCTAACTGAACTACCAGTACCCACGCGAACTGGt < 1:234320/146‑1 (MQ=255) aTGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCTGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAgggg < 8:223834/149‑1 (MQ=255) aTGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAgggg < 5:289038/149‑1 (MQ=255) tGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAg > 5:162312/1‑121 (MQ=255) tGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAg < 6:162312/121‑1 (MQ=255) tGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGc < 7:191890/149‑1 (MQ=255) aCCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGCATACCCCGGc > 3:220550/1‑148 (MQ=255) aCCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGCATACCCCGGc > 3:226614/1‑148 (MQ=255) tGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGCATACCCCGGCAAgc > 6:405707/1‑149 (MQ=255) ccAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGCATACCCCGGCAAGCTGGCTgc < 4:79487/149‑1 (MQ=255) cgcAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGCATACCCCGGCAAGCTGGCTGCGCGaa < 4:153124/149‑1 (MQ=255) cAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCTGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGCATACCCCGGCAAGCTGGCTGCGCGAAtt < 5:155656/149‑1 (MQ=255) gtcGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGCATACCCCGGCAAGCTGGCTGCGCGAATTGTGCGa < 8:52388/147‑1 (MQ=255) gCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGCATACCCCGGCAAGCTGGCTGCGCGAATTGTGc > 5:216705/1‑147 (MQ=255) gTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTGCCAGTACCGCCGCGAAGTGGTGCCCGAGGGGCATCCCCCGGCAAGCTGGCTGCGCGAATTGTGGGAGCAAGGcc > 8:406812/1‑148 (MQ=255) tATCCGCTCGACCTGCTGTCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGATCGAACTGAACTACCAGTACCCACGCTAACTGGTGCCCGAGGGGCATACCCCTGCAAGCTGGCTGCGCGAATTGTGCGAGCAAGGCa < 7:390441/148‑1 (MQ=255) cagggtcTCGGCCAGCAGGTCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGCATACCCCGGCAAGCTGGCTGCGCGAATTGTGCGAGCAAGGCAt > 3:95884/7‑149 (MQ=255) tCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGCATACCCCGGCAAGCTGGCTGCGCGAATTGTGCGAGCAAGGCATGc > 6:20122/1‑149 (MQ=255) aCCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGCATACCCCGGCAAGCTGGCTGCGCGAATTGTGCGAGCAAGGCATGCcgctgcgc > 5:47142/1‑149 (MQ=255) aCCTGCTGGCCGAGACCCTGGGCATGGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGCATACCCCGGCAAGGTGGCTGCGCGAATTGTGCGAGCAAGGCAGGCcgctgcgc < 3:299231/149‑1 (MQ=255) ctgctgGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGCATACCCCGGCAAGCTGGCTGCGCGAATTGTGCGAGCAAGGCATGCcgctgcgctg > 3:82164/1‑149 (MQ=255) | ACGTGCGTGGTCGCCGTGCCTTGCAGGACTGCATGACTGCCATCCGCCAGCATTGCCAGGTGAGCGAGGCCGGGCGCTTTCTGTTTGCCAATGGCGAAC‑GGCACCTGCGCAGCCAGGCGCAACTGGCCGAGCTGTATCCGCTCGACCTGCTGGCCGAGACCCTGGTCATTGCCCGGCGCTGCCAGTTTGACCTGAGCGAACTGAACTACCAGTACCCACGCGAACTGGTGCCCGAGGGGCATACCCCGGCAAGCTGGCTGCGCGAATTGTGCGAGCAAGGCATGCCGCTGCGCTG > NC_002947/3528761‑3529055 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |