| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,503,790 | A→G | 26.1% | intergenic (+39/‑59) | xanP → / → tusD | xanthine permease/sulfur transfer protein complex subunit TusD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,503,790 | 0 | A | G | 26.1% | 26.1 / 9.6 | 23 | intergenic (+39/‑59) | xanP/tusD | xanthine permease/sulfur transfer protein complex subunit TusD |
| Reads supporting (aligned to +/- strand): ref base A (11/6); new base G (3/3); total (14/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.87e-01 | |||||||||||
GGCGGCGATTCGCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTGG > NC_002947/4503652‑4503930 | ggcggcGATTCGCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGTGCAAgcgggcg < 4:304491/149‑1 (MQ=255) ggcgATTCGCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGACGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGTGCAAgcgggcgcgg < 1:133891/149‑1 (MQ=255) cTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATc < 8:341624/149‑1 (MQ=255) tACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGTGCAAgcgggcgcgg < 6:5788/116‑1 (MQ=255) tACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGTGCAAgcgggcgcgg > 5:5788/1‑116 (MQ=255) cgcTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGa > 3:64154/1‑148 (MQ=255) tGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATGATGGGACCATTCCGTTGCATGAGTTAGCCATGAAAtt > 4:297187/1‑149 (MQ=255) gTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCg > 7:3859/1‑149 (MQ=255) tGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCGT‑TTTTGCGTTATCATGGGACCATTCCTTTGGATGTGTTTGGGATGAAATTAGCTa > 1:154353/1‑148 (MQ=255) cTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATcgcg < 4:64154/149‑1 (MQ=255) gTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGgt < 8:3859/148‑1 (MQ=255) gCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCctct > 8:397261/1‑148 (MQ=255) ccgcgcccgcTTGTGCAAGCGGGCGCGGGCTTATTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCg > 1:267353/1‑149 (MQ=255) ccgcgcccgcTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCgg > 6:154181/1‑149 (MQ=255) ccgcgcccgcTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCgg < 7:164421/149‑1 (MQ=255) cgcgcccgcTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGt > 1:71177/1‑149 (MQ=255) cgcgcccgcTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATAATGGCACCATTACTTTGCAAGAGTTAGACAAGAAATTAGCTATCGCGGTGTTGTCCCCGGCCCATGCGCCCTCATACCCAAGCGCCCTGCGCTTAGCCGAGGCCGt > 6:48397/1‑149 (MQ=255) cccgcTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTg < 3:147873/149‑1 (MQ=255) ccgcTTGTGCAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTgg > 5:124820/1‑149 (MQ=255) ccgcTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTgg > 5:225945/1‑149 (MQ=255) ccgcTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTgg > 6:435096/1‑149 (MQ=255) gcTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTAtag > 1:295820/1‑79 (MQ=255) gcTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATcg < 2:295820/81‑1 (MQ=255) | GGCGGCGATTCGCAATGTGCTGGAGTCGGGTGTGGCTACCGGGGGGATTTGTGCGCTGGTGCTGAACTGGTTCTTGCCGGAGGGCAAGGAGCAGGCTTGAACCTTGAGACTGAATGAGAGTAGCCCGCGCCCGCTTGCACAAGCGGGCGCGGGCTT‑TTTTGCTTTATCATGGCACCATTCCTTTGCATGAGTTAGCCATGAAATTCGCTATCGCGGTGTTCTCCCCGGCCCATGCGCCCTCTTCGCGACGCGCCCTGCGCTTCGCCGAGGCGGTGCTGG > NC_002947/4503652‑4503930 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |