| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,520,454 | A→T | 7.4% | intergenic (+45/+27) | cspD → / ← icd | DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,520,454 | 0 | A | T | 7.4% | 214.4 / 5.4 | 77 | intergenic (+45/+27) | cspD/icd | DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (34/37); new base T (2/4); total (36/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCCAAGGGCTTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCT > NC_002947/4520308‑4520599 | cccAAGGGCTTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTaaa < 8:17685/149‑1 (MQ=255) ccAAGGGCTTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGGTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAGACTGCAAGAGCCTGGCTGCCTGAGCTGTGCCGCTAGACAA‑‑TAAAATCGGCCGCTTCTTTaa > 8:379784/1‑147 (MQ=255) ccAAGGGCTTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTaa > 7:20373/1‑147 (MQ=255) ccAAGGGCTTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTaa > 2:386591/1‑147 (MQ=255) cAAGGGCTTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGAGCATGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATAGGCCGCTTCTTTaaa > 1:131368/1‑148 (MQ=255) cAAGGGCTTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTaa > 7:259752/1‑146 (MQ=255) aaGGGCTTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGTTAGACAA‑‑AAAAATCGGCCGCTTCTTTAAaaga < 1:52103/149‑1 (MQ=255) ggCTTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGc < 7:251823/149‑1 (MQ=255) ttGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAACGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGAc > 5:261075/1‑149 (MQ=255) cACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCg < 1:386591/148‑1 (MQ=255) aCGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGt > 2:131005/1‑149 (MQ=255) gCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGttt > 4:205900/1‑149 (MQ=255) cGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAACCGGTCGCTTCTTTTAAAGAAGCGGCCGAttttt < 5:217558/149‑2 (MQ=39) cGTTGAAATCAAAGATGCCGCGGCCGCGGCGGCAGAGGCTGACAGAG‑CCTTGTGCGATCCGCAAAGCGAAACTGCAAAAGCCTGACTTCCTGCGCTGTTCCGAGAGACAA‑‑AAAAATCGGTCGCTTCTTTTAAAGAAGCGGCCGAttttt < 7:371834/149‑2 (MQ=38) gTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCt < 7:76246/149‑1 (MQ=255) ttGAAATCAAAGATGCCGCCGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAACCGGTCGCTTCTTTTAAAGAAGCGGCCGAttttttt < 5:442833/149‑4 (MQ=38) aaaTCAAATATGCAGCGGCCGCTGCGGTTTAGGCTGCAAGAG‑CCTTGGGCGTGCCGCAAAGCGAAGCTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATTTACAA‑‑AAAAATGGTCCGTTTCTTTAAAAGAAGCGACCGGTTTTCtttt < 4:410951/148‑1 (MQ=255) aaaTCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGtt < 7:193558/148‑1 (MQ=255) aaaTCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGtt < 2:74946/148‑1 (MQ=255) tCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCt > 5:217131/1‑149 (MQ=255) tCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCt > 7:250281/1‑149 (MQ=255) aaaGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCtt < 3:205900/148‑1 (MQ=255) tctGCCGCAGCGGCCGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACAt > 3:379479/3‑149 (MQ=255) gATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTAGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACAt < 8:318236/149‑1 (MQ=255) cgcgGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGtt > 5:440151/1‑149 (MQ=255) ggCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGa < 1:268722/149‑1 (MQ=255) cGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGGTTGATCa > 8:380466/1‑149 (MQ=255) gCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTc < 2:308097/149‑1 (MQ=255) cGGCATAGTCTGCCAGAG‑CCTTGGGCGAGCCGCAAATCGAAACAGCAAAAGCCTGACTTGCTGCGCTGTGCCGTTATACAACCTAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCAtt < 1:131005/148‑1 (MQ=255) gCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATc < 8:259752/149‑1 (MQ=255) gCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATc > 7:362769/1‑149 (MQ=255) gCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCaaa < 8:250281/149‑1 (MQ=255) ccAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGc < 7:306050/147‑1 (MQ=255) cAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCAttt < 7:113382/134‑1 (MQ=255) cAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCAttt > 8:113382/1‑134 (MQ=255) cTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAgctgc < 8:20373/149‑1 (MQ=255) gggCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTa > 5:8186/1‑149 (MQ=255) cGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTg < 7:229265/149‑1 (MQ=255) cGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTg > 6:341016/1‑149 (MQ=255) aaaGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGgcg > 1:30293/1‑149 (MQ=255) aaaGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGgcg > 3:214942/1‑149 (MQ=255) aaGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTAcc > 8:332694/1‑139 (MQ=255) aaGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTAcc < 7:332694/139‑1 (MQ=255) cGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCt < 7:342639/149‑1 (MQ=255) gAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTc > 1:186009/1‑149 (MQ=255) gagatccAAAAGCGTGACTGCGTGCGGTGGGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAACCCTGAGCTGCTTACCAGCTTGGCGCCCTcc < 3:247522/143‑1 (MQ=255) aaaCTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTc > 2:12479/1‑148 (MQ=255) aaCTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCa < 4:214942/149‑1 (MQ=255) aaCTGCAAAAGACTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCa < 8:362769/149‑1 (MQ=255) tGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCa > 1:69466/1‑146 (MQ=255) tGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATc > 7:342301/1‑148 (MQ=255) tGCAAAAGCCTGACTGCCTGCGCTGTCCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCa < 2:69466/146‑1 (MQ=255) cAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAAt > 1:430981/1‑149 (MQ=255) cAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCCCCAAAGCCTGAGCTGATTACCAGCTTGGCGGCCTCCaagagc > 4:247522/1‑144 (MQ=255) aaaGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATTGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCg < 4:379479/149‑1 (MQ=255) aaGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAg > 8:180845/1‑110 (MQ=255) aaGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAg < 7:180845/110‑1 (MQ=255) aaGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCATTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAAt > 5:86045/1‑146 (MQ=255) aaGCCGTACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAAt < 6:86045/146‑1 (MQ=255) aGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCt > 7:281670/1‑149 (MQ=255) aGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCt < 2:30293/149‑1 (MQ=255) ccTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCg < 1:75539/149‑1 (MQ=255) gACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGCCCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGATCGaaa > 3:159798/1‑149 (MQ=255) ctgcGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAg < 1:346457/149‑1 (MQ=255) cgcTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTAc > 1:408859/1‑109 (MQ=255) cgcTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGt > 2:99838/1‑148 (MQ=255) tgtgCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACg > 4:239825/1‑149 (MQ=255) gATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTg < 6:217131/149‑1 (MQ=255) gATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTg > 2:353829/1‑149 (MQ=255) aTAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTgg > 5:3891/1‑149 (MQ=255) aTAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTgg < 1:99838/149‑1 (MQ=255) taCAA‑‑AAAAATGGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGGCACGGTCTTGGcc < 6:261075/147‑1 (MQ=255) cAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGc > 2:126862/1‑148 (MQ=255) aa‑‑aaaaaTCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCaa > 5:133268/1‑149 (MQ=255) aa‑‑aaaaaTCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCaa > 4:258086/1‑149 (MQ=255) aaaaTCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATgg < 1:12479/149‑1 (MQ=255) aaaTCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGgc < 2:430981/149‑1 (MQ=255) ccGGTCGCTTCTTTTAAAGAAGCGGCCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGgcgc > 3:62834/2‑148 (MQ=255) ggtcGCTTCTTTTAAAGAAGCGGCCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCCAAATAGTAGGTCACGGTCTTGGCCGCAATGGCGACAt > 8:150077/4‑149 (MQ=255) cGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTgg < 3:239825/149‑1 (MQ=255) cttTTAAAGAAGCGGCCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGcc < 4:62834/148‑1 (MQ=255) tttAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCt > 6:124673/1‑149 (MQ=255) tAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGccc < 1:126862/146‑1 (MQ=255) | CCCAAGGGCTTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAG‑CCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCT > NC_002947/4520308‑4520599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |