| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,520,464 | A→G | 11.1% | intergenic (+55/+17) | cspD → / ← icd | DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,520,464 | 0 | A | G | 11.1% | 205.6 / 14.6 | 82 | intergenic (+55/+17) | cspD/icd | DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (34/38); new base G (3/6); total (38/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.34e-01 | |||||||||||
TTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCTTGATGATCAGGTC > NC_002947/4520317‑4520612 | ttGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAACGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGAc > 5:261075/1‑149 (MQ=255) cACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCg < 1:386591/148‑1 (MQ=255) aCGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGt > 2:131005/1‑149 (MQ=255) gCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGttt > 4:205900/1‑149 (MQ=255) cGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAACCGGTCGCTTCTTTTAAAGAAGCGGCCGAttttt < 5:217558/149‑2 (MQ=39) cGTTGAAATCAAAGATGCCGCGGCCGCGGCGGCAGAGGCTGACAGAGCCTTGTGCGATCCGCAAAGCGAAACTGCAAAAGCCTGACTTCCTGCGCTGTTCCGAGAGACAA‑‑AAAAATCGGTCGCTTCTTTTAAAGAAGCGGCCGAttttt < 7:371834/149‑2 (MQ=38) gTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCt < 7:76246/149‑1 (MQ=255) ttGAAATCAAAGATGCCGCCGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAACCGGTCGCTTCTTTTAAAGAAGCGGCCGAttttttt < 5:442833/149‑4 (MQ=38) aaaTCAAATATGCAGCGGCCGCTGCGGTTTAGGCTGCAAGAGCCTTGGGCGTGCCGCAAAGCGAAGCTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATTTACAA‑‑AAAAATGGTCCGTTTCTTTAAAAGAAGCGACCGGTTTTCtttt < 4:410951/148‑1 (MQ=255) aaaTCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGtt < 2:74946/148‑1 (MQ=255) aaaTCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGtt < 7:193558/148‑1 (MQ=255) tCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCt > 7:250281/1‑149 (MQ=255) tCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCt > 5:217131/1‑149 (MQ=255) aaaGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCtt < 3:205900/148‑1 (MQ=255) tctGCCGCAGCGGCCGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACAt > 3:379479/3‑149 (MQ=255) gATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTAGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACAt < 8:318236/149‑1 (MQ=255) cgcgGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGtt > 5:440151/1‑149 (MQ=255) ggCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGa < 1:268722/149‑1 (MQ=255) cGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGGTTGATCa > 8:380466/1‑149 (MQ=255) gCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTc < 2:308097/149‑1 (MQ=255) cGGCATAGTCTGCCAGAGCCTTGGGCGAGCCGCAAATCGAAACAGCAAAAGCCTGACTTGCTGCGCTGTGCCGTTATACAACCTAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCAtt < 1:131005/148‑1 (MQ=255) gCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATc < 8:259752/149‑1 (MQ=255) gCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATc > 7:362769/1‑149 (MQ=255) gCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCaaa < 8:250281/149‑1 (MQ=255) ccAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGc < 7:306050/147‑1 (MQ=255) cAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCAttt < 7:113382/134‑1 (MQ=255) cAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCAttt > 8:113382/1‑134 (MQ=255) cTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAgctgc < 8:20373/149‑1 (MQ=255) gggCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTa > 5:8186/1‑149 (MQ=255) cGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTg > 6:341016/1‑149 (MQ=255) cGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTg < 7:229265/149‑1 (MQ=255) aaaGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGgcg > 3:214942/1‑149 (MQ=255) aaaGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGgcg > 1:30293/1‑149 (MQ=255) aaGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTAcc > 8:332694/1‑139 (MQ=255) aaGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTAcc < 7:332694/139‑1 (MQ=255) cGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCt < 7:342639/149‑1 (MQ=255) gAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTc > 1:186009/1‑149 (MQ=255) gagatccAAAAGCGTGACTGCGTGCGGTGGGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAACCCTGAGCTGCTTACCAGCTTGGCGCCCTcc < 3:247522/143‑1 (MQ=255) aaaCTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTc > 2:12479/1‑148 (MQ=255) aaCTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCa < 4:214942/149‑1 (MQ=255) aaCTGCAAAAGACTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCa < 8:362769/149‑1 (MQ=255) tGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCa > 1:69466/1‑146 (MQ=255) tGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATc > 7:342301/1‑148 (MQ=255) tGCAAAAGCCTGACTGCCTGCGCTGTCCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCa < 2:69466/146‑1 (MQ=255) cAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAAt > 1:430981/1‑149 (MQ=255) cAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCCCCAAAGCCTGAGCTGATTACCAGCTTGGCGGCCTCCaagagc > 4:247522/1‑144 (MQ=255) aaaGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATTGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCg < 4:379479/149‑1 (MQ=255) aaGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAg > 8:180845/1‑110 (MQ=255) aaGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAg < 7:180845/110‑1 (MQ=255) aaGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCATTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAAt > 5:86045/1‑146 (MQ=255) aaGCCGTACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAAt < 6:86045/146‑1 (MQ=255) aGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCt > 7:281670/1‑149 (MQ=255) aGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCt < 2:30293/149‑1 (MQ=255) ccTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCg < 1:75539/149‑1 (MQ=255) gACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGCCCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGATCGaaa > 3:159798/1‑149 (MQ=255) ctgcGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAg < 1:346457/149‑1 (MQ=255) cgcTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTAc > 1:408859/1‑109 (MQ=255) cgcTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGt > 2:99838/1‑148 (MQ=255) tgtgCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACg > 4:239825/1‑149 (MQ=255) gATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTg < 6:217131/149‑1 (MQ=255) gATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTg > 2:353829/1‑149 (MQ=255) aTAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTgg > 5:3891/1‑149 (MQ=255) aTAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTgg < 1:99838/149‑1 (MQ=255) taCAA‑‑AAAAATGGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGGCACGGTCTTGGcc < 6:261075/147‑1 (MQ=255) cAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGc > 2:126862/1‑148 (MQ=255) aa‑‑aaaaaTCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCaa > 5:133268/1‑149 (MQ=255) aa‑‑aaaaaTCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCaa > 4:258086/1‑149 (MQ=255) aaaaTCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATgg < 1:12479/149‑1 (MQ=255) aaaTCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGgc < 2:430981/149‑1 (MQ=255) ccGGTCGCTTCTTTTAAAGAAGCGGCCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGgcgc > 3:62834/2‑148 (MQ=255) ggtcGCTTCTTTTAAAGAAGCGGCCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCCAAATAGTAGGTCACGGTCTTGGCCGCAATGGCGACAt > 8:150077/4‑149 (MQ=255) cGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTgg < 3:239825/149‑1 (MQ=255) cttTTAAAGAAGCGGCCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGcc < 4:62834/148‑1 (MQ=255) tttAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCt > 6:124673/1‑149 (MQ=255) ttaaaGAAGCGGCCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAg < 6:427687/108‑1 (MQ=255) ttaaaGAAGCGGCCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAg > 5:427687/3‑110 (MQ=255) tAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGccc < 1:126862/146‑1 (MQ=255) aaaGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCTtgat < 2:131368/149‑1 (MQ=255) aaaGAAGCGACCGGTTTTCTGTTGCCATACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCTtga < 7:379784/148‑1 (MQ=255) aagaagCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCTtgat > 8:42313/1‑148 (MQ=255) gaagCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCTTgatgat < 6:8186/149‑1 (MQ=255) agCGGCCGGTTTTCTGTTGCCTTACTTGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCTTGATGATc < 7:150077/148‑1 (MQ=255) aCCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTAACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCTTGATGATCAGGTc > 7:36738/1‑149 (MQ=255) | TTGCACGCCGTTGAAATCAAAGATGCCGCGGCCGCTGCGGCAGAGGCTGCCAGAGCCTTGGGCGAGCCGCAAAGCGAAACTGCAAAAGCCTGACTGCCTGCGCTGTGCCGATAGACAA‑‑AAAAATCGGCCGCTTCTTTAAAAGAAGCGACCGGTTTTCTGTTGCCTTACATGTGTTTGATCATTTCATCGCCAAAGCCTGAGCTGCTTACCAGCTTGGCGCCCTCCATCAATCGCTCGAAATCGTAGGTCACGGTCTTGGCCGCAATGGCGCCATTGGTGCCCTTGATGATCAGGTC > NC_002947/4520317‑4520612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |